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4D Imaging and Tracking

4D Imaging and Tracking. Alan Greenaway. Imaging. Basic principles. Derived from wavefront sensing in astronomical adaptive optics Conventional imaging system gives in-focus image of a single object plane. I. M. A. G. E. D. i. f. f. r. a. c. t. i. o. n. O. r. d. e. r. -.

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4D Imaging and Tracking

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  1. 4D Imaging and Tracking Alan Greenaway http://waf.eps.hw.ac.uk/

  2. Imaging http://waf.eps.hw.ac.uk/

  3. Basic principles • Derived from wavefront sensing in astronomical adaptive optics • Conventional imaging system gives in-focus image of a single object plane I M A G E http://waf.eps.hw.ac.uk/

  4. D i f f r a c t i o n O r d e r - 1 0 + 1 I M A G E Basic principles • Conventional imaging system gives in-focus image of a single object plane • Combined with conventional grating gives multiple images of single object plane http://waf.eps.hw.ac.uk/

  5. Diffractive optics • Distorted grating gives different phase shift in each diffraction order • Principle of detour phase  holography • Quadratic distortion  wavefront curvature • Acts like lens with different focal length in each diffraction order Off-axis Fresnel lens http://waf.eps.hw.ac.uk/

  6. - 1 0 + 1 3-D Snapshot Imaging • Simple & cheap to manufacture • Good control of divergence • Phase grating etch gives energy- balance control • High optical efficiency from binary grating Blanchard & Greenaway App.Opt. 38(1999)6692 http://waf.eps.hw.ac.uk/

  7. - 1 0 + 1 3-D Snapshot Imaging • Simple & cheap to manufacture • Good control of divergence • Phase grating etch gives energy- balance control • High optical efficiency from binary grating In-focus images of various z-planes are at different magnification http://waf.eps.hw.ac.uk/

  8. Telecentricity Combination optical system - 1 Djidel, Gansel, Campbell & Greenaway, Opt Exp 14(2006)8269-8277 0 + 1 http://waf.eps.hw.ac.uk/

  9. Telecentricity - 1 0 + 1 Telecentric performance http://waf.eps.hw.ac.uk/

  10. Practicality Used on inverted and upright systems Efficiency Optical efficiency ~84% overall (~28% each order) Practicality & Efficiency? nm etch depth http://waf.eps.hw.ac.uk/

  11. First Biology Images GFP in drosophila ovary Epi-fluorescence images with 7.3µm between in-focus planes Principal application microtubule dynamics through EB1 tracks (with Davis, Oxford) GFP in plant-cell mitochondria bright filed (upper row) and epi-fluorescence (bottom row) 1µm separation between in-focus planes(with Logan, St Andrews) http://waf.eps.hw.ac.uk/

  12. 3D movies • 9 z-plane phase-contrast images of Hela cells • Z-plane separation 810nm • 3 z-plane DIC images from movie of Hela mitosis With Allan, Manchester http://waf.eps.hw.ac.uk/

  13. Motility Measurement • Sperm motility from phase-contract and/or dark-field imaging • Current approach uses apparent length as a proxy for out-of-plane deformation of tail • Multi z-plane images provide extra information (with Kirkman-Brown, Birmingham) http://waf.eps.hw.ac.uk/

  14. 3D ‘snapshot’ images on commercial microscopes All image modes but scanning demonstrated 3D tracking (4D data) Z-plane separations 0 to many microns Simultaneous z-stacks Up to 9 simultaneous planes demonstrated Low-cost add on Work on sperm motility starts in September Imaging- summary http://waf.eps.hw.ac.uk/

  15. Broadband Application • Careful design achieve ‘white light’ imaging • Unfiltered halogen light Blanchard & Greenaway, Opt. Commun. 183(2000)29-36 http://waf.eps.hw.ac.uk/

  16. Tracking http://waf.eps.hw.ac.uk/

  17. Beam divergence from source depends on optical aperture Defocused image on non-source planes reduces intensity… …thus to a reduction in sharpness (integral of intensity squared) Suitable for real-time analysis and CMOS detector technologies Ranging in Depth with Sharpness http://waf.eps.hw.ac.uk/

  18. Experimental Setup 215 mm Experimental arrangement Iris f = 215 mm f = 200 mm Mirror Camera Telecentric: Magnification equal in all diffraction orders Objective Nanoholes He-Ne Laser Illumination x, y, z Nano- positioners http://waf.eps.hw.ac.uk/

  19. 25 mm 1.5 mm Nanohole test objects • 210 nm diameter holes in Al foil • Single point source • Simulates fluorescent particle • Mask / hole contrast >104 • Brightness limited only by illumination source http://waf.eps.hw.ac.uk/

  20. -1 order in focus 0th order in focus +1 order in focus Image Resolution: No grating = 233nm With grating = 226nm and 231nm (for 0th and ±1orders) Resolution on 3 planes -1 order in focus -1 order in focus 0th order in focus 0th order in focus 0th order in focus +1 order in focus +1 order in focus +1 order in focus http://waf.eps.hw.ac.uk/

  21. Sharpness Problem: A single mage sharpness measurement gives ambiguous depth position http://waf.eps.hw.ac.uk/

  22. Unique depth indication… Solution: QD grating method gives 3 simultaneous image sharpness (one from each order) for each particle. 2 or more images resolve ambiguity http://waf.eps.hw.ac.uk/

  23. ML depth estimator http://waf.eps.hw.ac.uk/

  24. Principle • For any given z-position of source • PDF for sharpness dependence on photon flux and optics is ‘known’ • Particle depth is ‘most likely’ value that is consistent with measured data – choose z to maximise http://waf.eps.hw.ac.uk/

  25. Log Sharpness SNR Solid – photon bias Circles – photon subtracted Dainty & GreenawayJOSA 69(1979)786-790 Dotted – actual sharpness http://waf.eps.hw.ac.uk/

  26. What is possible? • MVB model • SNR per image • Many approximations – check… Source z-position http://waf.eps.hw.ac.uk/

  27. Simple algorithm tracking points with high resolution More analytic work needed Cluttered backgrounds yet to be tried +8.1nm demonstrated in first experiment nm depth resolution with ~thousand detected photons Ad-hoc calibration Work on models continues Tracking - summary http://waf.eps.hw.ac.uk/

  28. Thanks… STFC for PIPPS/Bio-Mini-PIPSS funding… EPSRC bio-photonics platform funding… P.A. Dalgarno1, H.I.C. Dalgarno1 , R.J. Warburton1, A. Putod1, S. Aitken1, A Weis1, C Diez1, Alan Baird1 D.P. Towers2, C.E. Towers2, N.C Angarita-Jaimes2, S Chen2 D.J. Smith3, J.C. Kirkman-Brown3, J. Gaham4, V J Allan5, R Southern5, P Marsh5, I Davis6, R Parton6, K Lillie6 1 Dept Physics, SUPA/IIS, Heriot-Watt University, UK 2 School of Mechanical Engineering, University of Leeds, Leeds, UK • Centre for Human Reproductive Science, Birmingham Women’s NHS Foundation Trust, Edgbaston Birmingham, UK • Cairn Research Ltd, UK • Faculty of Life Sciences, University of Manchester • Dept of Biochemistry, University of Oxford http://waf.eps.hw.ac.uk/

  29. Questions?? http://waf.eps.hw.ac.uk/

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