'Swiss prot' presentation slideshows

Marie-Claude.Blatter@isb-sib.ch Swiss-Prot group, Geneva SIB Swiss Institute of Bioinformatics

The UniProt knowledgebase www.uniprot.org a hub of integrated protein data http://education.expasy.org/cours/Turin/. Marie-Claude.Blatter@isb-sib.ch Swiss-Prot group, Geneva SIB Swiss Institute of Bioinformatics. Protein sequences.

875 views • 75 slides

Protein Sequence Databases

3.86k views • 66 slides

P a t t e r n d a t a b a s e s

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Lecture Outline

Lecture Outline. Introduction Data mining sources: GO, InterPro, KEGG, UniProt Tools to do the data mining: FatiGO FatiWISE. Data mining Microarray results. Microarray experiments are done to answer a biological question

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Nobody said it was easy: Semantically Discovering BioGrid Services is tricky

Nobody said it was easy: Semantically Discovering BioGrid Services is tricky. Professor Carole Goble University of Manchester, UK myGrid project http://www.mygrid.org.uk. Environmental requirements of bioinformatics in silico experimentation The services

596 views • 49 slides

Biological databases an introduction

Biological databases an introduction. By Dr. Erik Bongcam-Rudloff LCB-UU/SLU ILRI 2007. Biological Databases. Sequence Databases Genome Databases Structure Databases. Sequence Databases.

831 views • 47 slides

Course Introduction

Course Introduction. What these courses are about What I expect What you can expect. What these courses are about. overview of ways in which computers are used to solve problems in biology supervised learning of illustrative or frequently-used algorithms and programs

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Genome Annotation of Protein Function using Structural Data: Catalytic Residue Information

Genome Annotation of Protein Function using Structural Data: Catalytic Residue Information. Janet Thornton European Bioinformatics Institute ISMB/ECCB 2004 Glasgow. From Structure to Functional Annotation. From Structure To Biochemical Function.

477 views • 38 slides

Databases, archives, search tools. Bioinformatics:

715 views • 32 slides

Genome Annotation: A Protein-centric Perspective

Genome Annotation: A Protein-centric Perspective. Protein data contributing to genome annotation. Gene structure prediction Gene function prediction. UniProt. Collaboration between EBI, SIB and PIR Funded mainly by NIH Based on the original work on PIR, Swiss-Prot and TrEMBL.

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UniProt - The Universal Protein Resource

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UniProt to MeSH mapping proteins to disease terminologies

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Database 5: protein domain/family

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The use of 4-grams for Protein Classification and Sequence Comparison

The use of 4-grams for Protein Classification and Sequence Comparison. Dror Tobi, ShannChing Chen, Ivet Bahar. Each sequence or group of sequences is represented as a vector in the 20 4 -dimensional space of 4-grams

293 views • 21 slides

D ocenti: Dr. Stefania Bortoluzzi, Dr Alessandro Coppe Dipartimento di Biologia

Master FSE 2005 - c3 - 006/732 Modulo di Bioinformatica 24 ore. D ocenti: Dr. Stefania Bortoluzzi, Dr Alessandro Coppe Dipartimento di Biologia Universita' di Padova viale G. Colombo 3, 35131, Padova Tel. 0039 049 8276214 Email: stefibo@bio.unipd.it. Bioinformatica - OBIETTIVI.

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Lecture 92-09

Lecture 92-09. PROTEIN SEQUENCE ANALYSIS. PROTEIN DATABASES. PROTEIN SEQUENCE. PROPERTIES. TOOLS. MOTIF/DOMAIN. FOLDINDING. http://www.isb-sib.ch/. Protein Sequence Databases. PIR - International Protein Sequence Database. http://pir.georgetown.edu. Protein Data Bank.

383 views • 19 slides

molecular biology database2

molecular biology database2. Databases at ExPASY. Prominent databases: SWISS-PROT PROSITE ENZYME SWISS-2DPAGE SWISS-3DIMAGE, SWISS-MODEL Repository. SWISS-PROT - Protein knowledgebase.

311 views • 18 slides

Introducing Bioperl

Toward the Bioinformatics Perl programmer's nirvana. Introducing Bioperl. What Is Bioperl?. http://www.bioperl.org. Bioperl's Relationship To Project Ensembl. http://www.ensembl.org. Installing Bioperl. $ tar -zxvf current_core_stable.tar.gz $ tar -zxvf current_run_stable.tar.gz

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Peptide Sequences are Short

Introduction. C 3 Database Compression. Faster Search. Searching Human ESTs. C 3 sequence database [1] Complete: All 30-mers are represented Correct: No new 30-mers are represented Compact: 30-mers occur exactly once.

174 views • 1 slides