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GPSA - Grid Protein Sequence Analysis on the EGEE grid

GPSA - Grid Protein Sequence Analysis on the EGEE grid. Christophe Blanchet Pôle BioInformatique de Lyon - PBIL Institut de Biologie et Chimie des Protéines IBCP – CNRS UMR 5086 Lyon-Gerland, France Christophe.Blanchet@ibcp .fr http://pbil.ibcp.fr/~blanchet.

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GPSA - Grid Protein Sequence Analysis on the EGEE grid

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  1. GPSA - Grid Protein Sequence Analysison the EGEE grid • Christophe Blanchet • Pôle BioInformatique de Lyon - PBIL • Institut de Biologie et Chimie des ProtéinesIBCP – CNRS UMR 5086Lyon-Gerland, France • Christophe.Blanchet@ibcp.fr • http://pbil.ibcp.fr/~blanchet EgEE Conference 3, demo session, 20/04/2005, Athens GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

  2. Bioinformatic Resources on EGEE(Apr 2005) • Protein analysis application • Sequence similarity: BLAST, SSEARCH, FASTA • Multiple Alignment: ClustalW, MultAlin • Protein site/signatures: PattInProt • Secondary Struct. Pred: Predator, Gor4, Simpa96 • Data • Sequence Bank: SWISSPROT, TrEMBL • Pattern/Profile bank: PROSITE GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

  3. GPSA: proteinsequencesimilarity GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

  4. GPSA Status • New bioinformatic softwares integrated: • FASTA, BLAST, Multalin. • Multiple jobs integrated to GPSA: • waiting for the multiple-job availibility of the submission process: one JDL for several jobs on same data/softwares • Local file access: • testing complient SE/CE and managing data input of the BLAST algorithm. • certificat GRID-FR • Christophe Blanchet, Rémi Mollon • Guinea pig: not all the site has the last CA cert packages (0.28) • Security • Percentage of success: 79,1 % of success GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

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