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Angular Dependence of 3-bond J-couplings

Angular Dependence of 3-bond J-couplings. f. Bax, et al. (1994) Measurement of Homo- and Heteronuclear J-couplings from Quantitative J Correlation, Methods Enzymol., 239, 79-105. Detection of Hydrogen Bonds. h3 J NC ’ -0.2 to -0.9. h2 J HC ’ -0.6 to 1.3. h3 J HC a 0.0 to 1.4.

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Angular Dependence of 3-bond J-couplings

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  1. Angular Dependence of 3-bond J-couplings f Bax, et al. (1994) Measurement of Homo- and Heteronuclear J-couplings from Quantitative J Correlation, Methods Enzymol., 239, 79-105

  2. Detection of Hydrogen Bonds h3JNC’ -0.2 to -0.9 h2JHC’ -0.6 to 1.3 h3JHCa 0.0 to 1.4 Ref: Grzesiek, et al. (2001) Methods Enzymol., 338, 111-133

  3. Anisotropic Tumbling w.r.t. to BoResults in Residual Dipolar Couplings (RDCs) • Magnitude of the dipole-dipole interaction is orientation dependent w.r.t. to the static magnetic field (Bo) • Isotropic tumbling w.r.t. Bo normally averages dipolar couplings to zero • Small, but non-zero, magnetic susceptibility results in residual dipolar couplings that appear as apparent J-splittings

  4. Induced Residual Alignment of Diamagnetic Proteins • Lipid Bicelles LC (Tjandra & Bax, Science, 1997) • Purified Bacteriophage Particles (Pf1) LC(Hansen et al, J. Am. Chem. Soc, 1998) • Deformed Pores in Nondenaturing Polyacrylamide Gel (Sass et al, J. Biomol. NMR, 2000) dihexanoyl-phos- phatidylcholine (DHPC) dimyristoyl-phos- phatidylcholine (DMPC)

  5. RDC for Proteins in Solution Correlate Very Well With Predictions from High-Resolution Crystal Structures

  6. NMR Structure Determination Start with a peptide chain of random starting conformation Subject protein to a classical mechanical treatment (such as “simulated annealing”) that minimizes the total energy Simulated annealing protocol is a commonly used to minimize the energy. Protein is heated in the computer, which allows molecular motions to occur, and then is slowly cooled to minimize the energy (avoids local minima in the energy landscape)

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