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MAJOR MICROBIOLOGY

DEPARTMENT OF BIOLOGY POST GRADUATE SCHOOL BOGOR AGRICULTURAL UNIVERSITY 2009. MAJOR MICROBIOLOGY. MAJOR MICROBIOLOGY : AN OVERVIEW. Established in 1990 as Subprogram Study in the Study Program of Biology Composed on 2 division: Microbiology (Bacteriology) Mycology

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MAJOR MICROBIOLOGY

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  1. DEPARTMENT OF BIOLOGY POST GRADUATE SCHOOL BOGOR AGRICULTURAL UNIVERSITY 2009 MAJOR MICROBIOLOGY

  2. MAJOR MICROBIOLOGY : AN OVERVIEW • Established in 1990 as Subprogram Study in the Study Program of Biology • Composed on 2 division: Microbiology (Bacteriology) • Mycology • Staffs: 1 Prof, 10 doctors • Number of Student : ongoing student: 13 master, 8 doctoral • incoming student: 16 master, 3 doctoral • Programmes : • 1. Master in Microbiology: microbial biodiversity and bioprospecting, and environmental microbiology • Doctor of Philosophy in Microbiology • Supporting unit: IPB Culture Collection (currently developing through I-MHERE project

  3. VISION • To be recognized world-wide as the leading centre in tropical microbiological science for agriculture development and for human life quality improvement in 2020.

  4. MISSION • To develop human resources with high capacities in tropical microbial knowledge and technologies through undergraduate and postgraduate education. • To expand and transfer microbial knowledge and technologies for continuous improvement of agriculture and human life. • Increase the quality and quantity of research in tropical microbial knowledge and technologies particularly in biodiversity and bio-prospecting. • Increase networking through research and education partnership locally, nationally and globally.

  5. CURRICULUMMaster of Science Program (39 CSU) General courses English 3 CSU Stastical Analyses 3 CSU Compulsory courses Advanced Microbiology 2 CSU Microbial Physiology 2 CSU Microbial Genetic 2 CSU Microbial Laboratory 2 CSU Microbial Biotechnology 3 CSU Fungal Biotechnology 3 CSU Methodology of Science 2 CSU Colloqium 1 CSU Seminar 1 CSU Research and Thesis 6 CSU Elective courses Bio- prosepecting Industrial Microbiology 3 CSU Molecular Biotechnology 3 CSU Biotechnology of Antimicrobial Susbtance 3 CSU Environmental Microbiology Host-Microbes Interaction 3 CSU Environmental Microbiology 3 CSU Spoilage Fungi and Mycotoxins in foodstuff 3 CSU

  6. CURRICULUMDoctor of Philospophy Program (41 CSU) General Course Philosophy of Science 2 CSU Compulsory courses Advanced Microbial Physiology 3 CSU Advanced Fungal Biology 3 CSU Molecular Biology of Prokaryotic Diversity 3 CSU Microbial Genetic Engineering 3 CSU Colloqium 1 CSU Seminar 1 CSU Research and Thesis 12 CSU Elective courses Biology of Pathogenic Bacteria 2 CSU Gene Expression and Regulation 3 CSU Biology and Productivity of Actinomycetes 3 CSU Biology of Mycorrhiza 3 CSU Biology and Productivity of Macrofungi 3 CSU

  7. Teaching Staffs and Field Interest • Prof. Dr. Antonius Suwanto, MSc., Ph.D (Microbiology and Molecular genetics) • Dr. Anja Meryandini, MS (Microbial Physiology and Enzymology) • Dr. Aris Tri Wahyudi, MSi (Microbial Biotechnology) • Dr. Iman Rusmana, MSi. (Environmental Microbiology) • Dr. Nisa Rachmania, MSi. (Microbiology and Microbial Physiology) • Dr. dr. Sri Budiarti (Medical Microbiology, Bacterial-Human Cell Interaction) • Dr. Yulin Lestari (Microbial Ecophysiology) • Dr. Gayuh Rahayu (Mycology and Phytopathology) • Dr. Lisdar A Manaf (Mushroom Biology and Fungal Ecophysiology) • Dr. Nampiah Sukarno (Mycology and Mycorrhizal Biology) • Dr. Okky S. Darmaputra (Post Harvest Mycology)

  8. RESEARCH

  9. BACTERIOLOGY

  10. Aris Tri Wahyudi, PhD Marine Bioechnology Student Involved: 4 Students Sponge-Associated Bacteria Molecular Genetics Producing Anti- microbial Compounds Producing Enzyme Inhibitors Targets: 1. Antimicrobial Compounds from sponge-associated Bacteria 2. Molecules/Compounds as Enzyme Inhibitors 3. Molecular Genetic of Antimicrobial Compounds Synthesis

  11. Aris Tri Wahyudi, PhD Aris Tri Wahyudi, PhD -Pseudomonas sp -Bacillus sp Plant Growth PromotingRhizobacteria (PGPR) Student involved: 7 Students (2 PhD ; 2 S-2, 3 S-1) Formulation and Inoculant Prod. Biocontrol of Phytopathogen Plant Growth Promotion Bioactive Compounds Anti Phytopathogen • Formulation of PGPR as plant growth and Biocontrol • Molecular Genetic of Bioactive Compound Synthesis • Bioactive Compounds/Antibiotic from PGPR

  12. Dr. AnjaMeryandini • Research Interest: Microbial enzymes • Bacterial protease • Bacterial mannanase • Bacterial xylanase for animal feed processing 451-3 234P-16 SKK1-8 Clostridium bifermentansproducing protease enzyme Streptomycessp. producing xylanase enzyme

  13. 0.5 mm 0.5 mm 0.5 mm 0.5 mm 0.5 mm 0.5 mm 0.5 mm Dr. Nisa Rachmania Mubarik, MSi Head of Microbiology Division, Department of Biology, Faculty of Mathematics and Natural Sciences, Bogor Agricultural University • Research Interest: • Symbiotic Effectiveness of Inoculant Acid-Alumunium Tolerant Bradyrhizobium japonicum Strains with Soybean Cultivar Slamet in Acid Soils (3 master students, 2007-2009) • Isolations,Characterizations and Applications Microbial Enzymes (Protease, Amylase, Chitinase) (7 undergraduate student, 1 master students, 2007-2009) Chitin hydrolizationat 12 hours by cell cultures and chitinase of bacterial isolates I.5 and I.21 tested to Bemisiatabaci. Control (a), cell cultures treatment (b-d), enzyme treatment (e-g). Inoculant B. japonicum on peat carrier.

  14. Dr. ImanRusmana(irusmana@ipb.ac.id) Environmental Microbiologist RESEARCH INTEREST: Nitrogen cycling and N2O emission in tropical estuaries and agricultural system Student involved (9 master, 1 PhD) • Current Research Topics: • Methanotrophicbacteria as biofertilizersand methane emission reducers in rice fields • N2O reducing bacteria to reduce N2O emission from agriculture system • Nitrate reducing bacteria and Bacillus spp. as bioactive of biofilter in close system of larval rearing and nursery of aquacultures • Nitrate reducing and nitrifying bacteria as bioconditioner controlling nitrite and ammonia in shrimp ponds

  15. FROM MOLECULAR TO ECOLOGY Sampling for measurement and molecular analysis of nitrate reducing bacteria in sediment of tropical estuaries Bacteriocins purification and its antimicrobial activity from Bacillus spp. isolated from shrimp ponds Molecular characterization of methane monooxygenase genes Forward sequence of BGM9 mmoX gene: ATAANCGCAGCGTGTTNCAGGTCCGCGAGATCGCCGACCAGTCCGCCGCCGNCAGCNAGCAGACCGCCAGCTCCAGCAACGAACTGGCGCACCTGGGCAACGAGCTGCAACTGCAGGTGGGACGTTTCCGCCTGTGACACGCCNGTCGGTCGGTACGCCCGCTCCGGCCGATAACGGCAGGACAGTTGTCATGCGCATGGCGTAGGATCGGACACTCGCCATGAAGGGAGAGTGACCATGCGCCCGCTGACCATCGATATCGACGAACTGGACCTTCGCGCTTGATACCCAGGGTATCGATCACTACCTCGACCTGTTCAGTGGCCAGGTGCTGCTGATACCGGAGGACGACCCCGACCCGGAGCTCGCCGAACTGCTGCACCGCGAGCCGGAGCGCTACGAGTG Size of DNA fragments Reverse sequence of BGM9 mmoX gene: GGTATCANCAGCACCATGGCCACTGAACAGGTCGAGGTAGTGATCGATACCCTGGGTATCAAGCGCGAAGGCCAGTTCGTCGATATCGATGGTCAGCGGGCGCATGGTCACTCTCCCTTCATGGCGAGTGTCCGATCCTACGCCATGCGCATGACAACTGTCCTGCCGTTATCGGCCGGAGCGGGCGTACCGACCGACAGGCGCGTCACAGGCGGAAACGTCCCACCTGCAGTTGCAGCTCGTTGCCCAGGCGCGCCAGTTCGGTGCTGGAGCTGGCGGTCTGCTCGCTGGCGGCGGCGGACTGGTCGGCGATCTCGCGGACCTGCACCACGCTGCGGTTGATCTCCTCGGCAACGCTGCTCTGCTCCTCGGCGGCCGANGCGATCTGCAGGTTCATGCCCTTCCACAGCGGATATAATA Amplification of mmoX gene Amplification of pmoA gene

  16. Dr. dr. Sri Budiarti • Research Interest: Medicinal Microbiology • EnteropathogenicEschericia coli: • - mode of infection • - Extracellular protease activity • - Monoclonal antibody antiprotease activity • -Diagnostic kit design • Dengue and environmental health • Screening of Antimicrobial substance from bacteria and fungi

  17. Dr.Ir. Yulin Lestari INDONESIAN ACTINOMYCETES AS SOURCE OF BIOACTIVE COMPOUNDS USED FOR SOLVING AGRICULTURE, ENVIRONMENT AND HEALTH PROBLEMS • Collection of Actinomycetes isolates from unique tropical environment, and endophyteactinomycetes • In vitro and in vivo assay for: antimicrobes, enzyme inhibitor (e.g. a-glucosidase, b-lactamase), degrading enzymes (lipase, cellulose and lignolitic enzymes) • Target organisms: agriculture & horticulture plants, plantation, poultry, and human ) • Student involve: undergraduates (2) ,graduates ( 4 Master students), and 3 PhD students)

  18. MYCOLOGY

  19. Diversity of Indonesian Filamentous Fungi (205 genera) Ascomycota Incertae sedis Eurotiales Hypocreales Basidiomycota Zygomycota Agaricales Mucorales Polyporales

  20. Dr. OkkySetyawatiDarmaputra FUNGI ON FOODSTUFF AND THEIR MYCOTOXIN RESEARCH TITLE (Year 2009) : Population of Aspergillusflavusand Aflatoxin B1 Contents from Processed Peanut Products in Municipality of Bogor. ACTIVITIES : • Survey of processed peanut product consumptions • Sampling method of processed peanut products • Determination of A. flavus population and aflatoxin B1 contents EXPECTED OUTPUT:informationson A. flavus population and the levels of aflatoxin B1 in processed peanut products at retail levels

  21. J. curcas Curcuma sp. a b. c. a b. c. . a b. c. . a b. c. . a b. c. . a b. c . T. caccao P. falcataria Dr. Ir. Nampiah Sukarno • Research Interest: • Biology and Application of Phosphate Solubilizing Fungi • Biology and Application Mycorrhizal Fungi P. macrocarpa Development of Aspergillus carrying GFP gene for studying the ecological and colonization process P. macrocarpa • Green house • Control, b. A. niger, c. AMF Post tin mining area Agriculture area

  22. Edible Ectomycorrhiza

  23. Dr. Ir. GayuhRahayu • Research Interest: • Artificial Production of agarwood (Jin-koh) in planta and in vitro culture: • Inoculant Production • Mechanisms of terpenoid production • Inoculation Techniques Student involved ( 3 master students) • Manipulation of Soil Fungi for Forest Tree Growth and Health • Fungal decomposer of Shorea and Dryobalanopslitterand plant growth regulator producers • (student involved: 1 master, 1 undergraduates) compost ZPT bioassay Thermophilic Fungi • Amylolytic Fungi and its fermentation capacity for ethanol production • - Screening of potential mold and yeast

  24. Dr.Ir. Lisdar A.M. Sudirman • Research Interest: • Mushroom Biology and Biotechnology • Mushroom Antimicrobial activity

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