Profiles Research Networking Software Users Group Meeting profilestalyst.harvard

1. Profiles Research Networking SoftwareUsers Group Meetinghttp://profiles.catalyst.harvard.edu July 20, 2012

2. Agenda • Welcome to New Members • Upcoming Events • EAGER-Profiles • Profiles RNS 1.0.1

3. Profiles Users Group Members UCSF Fred Hutchinson CRC Oregon Health Sci U UC Davis (CBST) Touro University U Southern California UC San Diego Charles Drew U Hawaii Arizona State Montana State U Colorado Denver U Nebraska-Lincoln UW Madison U Illinois U Chicago Baylor College Med UT Southwestern UT Houston Jackson State (RTRN) Ohio State Cincinnati Children’s Case Western U Kentucky Vanderbilt Stem Cell U Arkansas Little Rock U Alabama Birmingham Harvard Univ Minnesota Dartmouth Univ Mass Boston Univ Tufts Univ Boston VA Rensselaer Univ Connecticut Univ Rochester NYU Med Ctr Mount Sinai Sch of Med MedMeme Thomas Jefferson UPenn Johns Hopkins USUHS-CNRM NIH George Wash U Penn State Childrens Nat Med Ctr Wake Forest Leadership in Med HSSC Georgia Tech Piedmont Healthcare Emory University Symplectic Limited (UK) McGill University (Canada) University of Cambridge (UK) Makerere University (Uganda) University of Leuven (Belgium) South-Valley University (Egypt) Elysium, Geneva (Switzerland) Beijing Normal University (China) University of the South Pacific (Fiji) Velammal Engineering College (India) Nati Sci Lib, Chinese Acad of Sci (China) Clinical & Biomedical Computing Ltd (UK) Ministério da Ciência e Tecnologia e Inovação (Brazil) Jonkoping University Engineering School (Sweden) Universidad Nacional Autonoma de Mexico (Mexico) Centre Interdisciplinaire de Nanoscience de Marseille (France)

4. University Spotlights Harvard University UCSF http://connects.catalyst.harvard.edu/profiles http://profiles.ucsf.edu South Carolina UConn Health Center University of Minnesota http://profiles.healthsciencessc.org http://profiles.uconn.edu http://profiles.ahc.umn.edu Boston University Wake Forest Medicne RTRN (18 RCMI Institutions) Penn State http://rtrnprofiles.rtrn.net/profilesweb http://profiles.tsi.wakehealth.edu http://profiles.psu.edu http://profiles.bumc.bu.edu

5. Upcoming Events • 3rd Annual VIVO Conference, Miami, FL, Aug 22-24, 2012 • “OpenSocial Workshop.” Workshop. Eric Meeks, Leslie Yuan, AnirvanChatterjee • “Building better teams: innovative approaches to the design and deployment of researcher recommendation systems.” Panel. Christopher Kelleher, Griffin Weber, Melissa Haendel, Jeff Horon and Noshir Contractor • “Linking Disciplines: Expanding Harvard Catalyst Profiles to Discover Connections across an Entire University.” Podium Presentation. Griffin Weber and Amy Brand • NSF Science of Science Policy (SciSIP) PI Meeting, Washington DC, Sep 20-21, 2012 • “EAGER-Profiles: Using researcher profiles to demonstrate the impact of investments in science.” Poster & Demonstration. Griffin Weber • AMIA Annual Symposium, Chicago, IL, Nov 3-7, 2012 • “Harvard Catalyst Profiles: Finding collaborators outside biomedicine.” Poster. Griffin Weber

6. EAGER-Profiles • NSF #1238469. Science of Science and Innovation Policy (SciSIP) • “EAGER-Profiles: Using researcher profiles to demonstrate the impact of investments in science” • Prototype of national research networking website (SciENCV) • Profiles of computer scientists at Harvard (Profiles RNS), UCSF (Profiles RNS), U Chicago (Profiles RNS), U Florida (VIVO), U Cambridge UK (Symplectic) • Illustrate connections between research inputs (e.g., grants & contracts) and research outputs (e.g., publications & patents) • Computer scientists are funded by many different agencies, their research outputs take different forms (pubs, software, data, etc.), and they collaborate across many disciplines

7. Profiles RNS 1.0.1 • The names of many web code files and database components were changed to make them more consistent throughout the software. • The documentation, particularly the Architecture Guide, was significantly expanded. ReadMeFirst and ReleaseNotes documents were created. • Database performance enhancements were made, which result in RDF data being returned faster, especially for profiles containing large numbers of triples. • Default editing modules for DataType and ObjectType properties were added. • A custom editing module was created for email address. • The Search API and SPARQL API were converted to SVC files and XSD files were created for each API.

8. Profiles, Networks, Connections

9. Website Framework

10. Website Framework

11. Applications

12. Database Schematic

13. Database Schemas & Tables [Profile.Cache].[SNA.Coauthor.Distance] Table Schema

14. Core Schemas

15. Extended Schemas

16. Security Groups

17. Node and Triple Tables [RDF.].[Node] [RDF.].[Triple]

18. Ontology Tables

19. Data Flow Loading person data from an external (e.g., HR) source [Profile.Import]  [Profile.Data]  [Profile.Cache]  [RDF.] Loading user account data from an external source [Profile.Import]  [User.Account]  [RDF.] Creating RDF data from an extended data table [Profile.Data]  [RDF.] Loading data as triples [RDF.Stage]  [RDF.] Adding new classes or properties to the ontology [Ontology.Import]  [Ontology.]  [RDF.Stage]  [RDF.] Presenting the RDF data in a format that can be used by SemWeb (SPARQL) [RDF.]  [RDF.SemWeb] Populating the search cache based on the RDF data [RDF.]  [Search.Cache]

20. Extending Profiles RNS • Extend the ontology • Define a namespace • Define the new class in that namespace • Define the new properties in that namespace • Import the data feed to an extended schema table • Create a new extended schema table (i.e., [Profile.Data].*) • Load the feed into the new table • Create a mapping from the new table to the ontology • Run ProcessDataMap to generate RDF