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Nottingham Arabidopsis Stock Centre

Garnet.arabidopsis.org.uk. Microarrays. UKCROP.NET. Bioinformatics (biological computing). Seeds, DNA, mutants and natural variants. Funded by the bbsrc. Nottingham Arabidopsis Stock Centre. http://ukcrop.net A consortium of 4 UK centres for Plant Bioinformatics.

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Nottingham Arabidopsis Stock Centre

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  1. Garnet.arabidopsis.org.uk Microarrays UKCROP.NET Bioinformatics (biological computing) Seeds, DNA, mutants and natural variants Funded by the bbsrc Nottingham Arabidopsis Stock Centre

  2. http://ukcrop.net A consortium of 4 UK centres for Plant Bioinformatics

  3. 5 species-specialised UK databases: • Arabidopsis • Barley • Brassica • Forage grasses • Millet • 2 broad species UK databases: • ComapDB • CropseqDB • ~25 external world databases mirrored

  4. Searched by text (e.g. by gene) Viewed for structure and properties. .. Placed in genomic context .. And in genetic / physical context All these databases can then be:

  5. Multiple small and medium size data donors (e.g. CSHL, Pereira, Bancroft, Sundaresan) Insert data (ATIS) & insert germplasm (JI) TAIR AFGC ABRC • NASCarrays • Local generation: • Spotted arrays • Affymetrix gene chips CRIME TranscriptomicsDB Bioinformatics Genomics (AGR) Germplasm & DNA data NASCproteomicsDB Proteomics (Cambridge) Metabolomics (Long Ashton)

  6. Bioinformatics Seeds ~ 400 K Arrays ~ 5 M AGR ~ 25 K

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