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Use SIOC RDF format for representation of scientific statements Annotated statements created by

Use SIOC RDF format for representation of scientific statements Annotated statements created by manual curation automated extraction of biomedical literature conversion of structured databases Scientific statements are annotated with Linked Data entities

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Use SIOC RDF format for representation of scientific statements Annotated statements created by

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  1. Use SIOC RDF format for representation of scientific statements • Annotated statements created by • manual curation • automated extraction of biomedical literature • conversion of structured databases • Scientific statements are annotated with Linked Data entities • Represent scientific assertions and data with the ease of blogging and tagging

  2. Identify key assertions in publications and database entries „... Substance Ainteracts withreceptor B in region C of the brain ...“ „... Region C has strong axonal projections into region D ...“ „... Region D is implicated in the processing of aversive stimuli ...“

  3. Substance A Interacts with Receptor B Region C axonal projections brain region D Region D aversive stimuli Interlink these entities with taxonomies & ontologies

  4. contains RDFa

  5. <http://hcls.deri.org/atag-data/pastebin.html#49ddfee65f7f4> a sioc:Item ; sioc:content "Huperzine A acts as a non-competitive antagonist of the NMDA receptors"@en ; sioc:topic <http://dbpedia.org/resource/Huperzine_A> , <http://purl.org/obo/owl/GO#GO_0048019> , <http://dbpedia.org/resource/NMDA_receptor> ; rdfs:seeAlso <http://www.ncbi.nlm.nih.gov/pubmed/11516831> . What the machine sees...

  6. database converted to aTags

  7. aTags generated by NLP web service

  8. aTag Explorer

  9. Light-weight representation of scientific statements, interlinked with information about persons and institutions What could this add to VIVO?

  10. http://hcls.deri.org/atag/

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