PdB

Nov 20, 2014

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2. 1. PdB. PdB. 4. 3. PdB. PdB. 5. 6. PdB. PdB.

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PdB

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2 1 PdB PdB 4 3 PdB PdB 5 6 PdB PdB

Structure database: PDB

Structure database: PDB. Tuomas Hätinen. Protein Data Bank. A repository for 3-D biological macromolecular structure. It includes proteins, nucleic acids and viruses. Obtained by X-Ray crystallography (80%) or NMR spectroscopy (16%). Protein Data Bank.

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PDB

Crystal supply. Screening. BL robotics. Data collection. Phasing. Tracing. SDC pipeline 2004 - 2006. 2004 9579 crystals screened 301 targets screened 350 datasets collected 162 targets collected 142 targets solved by X-ray 71 targets deposited. 2006 20971 647 641 311

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PDB 1cee

Structure of Cdc42 in complex with the GTPase-binding domain of the ‘Wiskott-Aldrich syndrome’ protein. Cdc42. WASP. PDB 1cee. List. Finish Breast Cancer Talk Look up Drugs affecting WAS and structures Conclusion/ WAS Write whole speech PRACTICE PRACTICE PRACTICe

425 views • 26 slides

PROJECT DATABASE(PDB)

PROJECT DATABASE(PDB). & PROCESS CAPABILITY BASELINE(PCB). Presented By Basker George. Process Database & Process Capability Baseline. Past experience play a key role in any organization for improvement & management. This experience should be captured & organized to enable learning

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DØ RunI PDB Migration

DØ RunI PDB Migration. DØ RunI Production Database: The main purpose of DØ PDB is to keep the history of data processing by DØ Offline software and the relevant history of the raw data from which it came. It is also a central repository for luminosity information relevant to the data.

247 views • 11 slides

Compressing a Single PDB

Compressing a Single PDB. Presented by: Danielle Sauer CMPUT 652 Project December 1, 2004. Outline. Problem Definition Key Background Approach Results Conclusion. Problem Definition. Motivation: What happens when a pattern database is too large to store in memory? We can:

262 views • 15 slides

The Protein Data Bank (PDB)

The Protein Data Bank (PDB). PDB is the principal repository for protein structures Established in 1971 Accessed at http://www.rcsb.org/pdb or simply http://www.pdb.org Currently contains over 32,000 structure entities. Updated 9/05. Page 287. PDB content growth (www.pdb.org).

2.4k views • 43 slides

Protein structures in the PDB

Protein structures in the PDB. Domains. proteins can be modular single chain may be divisible into smaller independent units of tertiary structure called domains domains are the basic unit of structure classification

869 views • 24 slides

PDB Pipeline

PDB Pipeline. October 19, 2006. History of the PDB. 1970s Community discussions about how to establish an archive of protein structures Cold Spring Harbor meeting in protein crystallography PDB established at Brookhaven (October 1971; 7 structures) 1980s

500 views • 35 slides

Java rychlokvaška pro PDB

Java rychlokvaška pro PDB. [ http://java.sun.com/ ]. Kafe ?. Java [en] = Kafe [cz] (hovor.) Jazyk… Překládá se na bytecode , který je interpretován JVM - kompilátor není JIT (obvykle) Java API knihovny [ http://dione.zcu.cz/java/sbornik.html ]. Jazyk Java.

332 views • 13 slides

pdb/

http://www.pdb.org/. Experimental approaches for structural biology. X-ray crystallography NMR cryoEM. Nucleic acids. four letters (DNA, RNA ) sequence - AACTAACG (5’ → 3’) DNA – double helix

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Resource Unavailability PDB

Resource Unavailability PDB. draft-karagiannis-ru-pdb-03.txt. Georgios Karagiannis, Attila Bader, Hannes Tschofenig, Lars Westberg. Problem to be solved. Without using signaling, how can a diffserv node at outside Diffserv domain(s) detect resource unavailability in Diffserv domain(s)?.

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The Protein Data Bank (PDB) & PDB Files

The Protein Data Bank (PDB) & PDB Files. Lesson Date: 09/01/04 – W Created by: Angela M. Amoia 08/20/04. Lesson Objectives. Recall what the PDB is and what is stores Recall what a PDB file is and what its contents stand for

284 views • 10 slides

Resource Unavailability PDB

Resource Unavailability PDB. draft-karagiannis-ru-pdb.txt. Georgios Karagiannis, Attila Bader, Hannes Tschofenig, Lars Westberg. Problem to be solved. Without using signaling, how can a diffserv node at outside Diffserv domain(s) detect resource unavailability in Diffserv domain(s)?.

85 views • 7 slides

Resource Unavailability PDB

115 views • 8 slides

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PdB

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Presentation Transcript

Structure database: PDB

PDB

PDB 1cee

PROJECT DATABASE(PDB)

DØ RunI PDB Migration

Compressing a Single PDB

The Protein Data Bank (PDB)

Protein structures in the PDB

PDB Pipeline

Java rychlokvaška pro PDB

pdb/

Resource Unavailability PDB

The Protein Data Bank (PDB) &amp; PDB Files

Resource Unavailability PDB

Resource Unavailability PDB

The Protein Data Bank (PDB) & PDB Files