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HPC at HCC Jun Wang

HPC at HCC Jun Wang. hcc.unl.edu. Outline of Workshop2. Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing system How to submit a serial job How to submit a MPI parallel job. HPC at HCC Jun Wang. hcc.unl.edu.

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HPC at HCC Jun Wang

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  1. HPC at HCCJun Wang hcc.unl.edu Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing system How to submit a serial job How to submit a MPI parallel job

  2. HPC at HCCJun Wang hcc.unl.edu Familiar with Linux file system Basic File System Structure Basic File System Partitions On tusker and sandhills: $HOME (/home) is read-only on computing nodes, 10 GB space/group, daily backup $WORK (/work) is writable on all nodes, 50 TB space/group, no backup

  3. HPC at HCCJun Wang hcc.unl.edu Familiar with BASH Shell environment

  4. HPC at HCCJun Wang hcc.unl.edu Familiar with module command

  5. HPC at HCCJun Wang hcc.unl.edu Familiar with module command

  6. HPC at HCCJun Wang hcc.unl.edu Familiar with queuing system-PBS

  7. HPC at HCCJun Wang hcc.unl.edu Familiar with queuing system-SLURM

  8. HPC at HCCJun Wang hcc.unl.edu How to submit a serial job

  9. HPC at HCCJun Wang hcc.unl.edu How to submit a serial job

  10. HPC at HCCJun Wang hcc.unl.edu How to submit a MPI parallel job

  11. HPC at HCCJun Wang hcc.unl.edu How to submit a MPI parallel job

  12. HPC at HCCJun Wang hcc.unl.edu More useful SLURM commands “sinfo” : Check available partitions and their status

  13. HPC at HCCJun Wang hcc.unl.edu More useful SLURM commands “scontrol show job YourJobID”: Check details of a specific job

  14. HPC at HCCJun Wang hcc.unl.edu Thank You! To be continued: How to run Gaussian09 How to compile and run GAMESS How to compile and run GROMACS

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