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SpHPP Bioinformatics. 3 rd CHr-16 Workshop.

SpHPP Bioinformatics. 3 rd CHr-16 Workshop. Miraflores de la Sierra December, 10 th -11 th 2012 Alberto Medina. MS/MS pipeline. Miape Extractor + Panalyzer . Protein Grouping. Solve questions (problems) regarding to Sequest . Include Java Library.

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SpHPP Bioinformatics. 3 rd CHr-16 Workshop.

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  1. SpHPP Bioinformatics.3rd CHr-16 Workshop. Miraflores de la Sierra December, 10th-11th 2012 Alberto Medina

  2. MS/MS pipeline Miape Extractor + Panalyzer . Protein Grouping. Solve questions (problems) regarding to Sequest. Include Java Library. Miape Extractor distribution including curated experiments. Re-Analyse external data. Add “queries”. Add spectral libraries. PX submission Miape Extractor: Batch-mode submission. Miape Extractor: Console Mode Ibermática’s solutions.

  3. Time Frame

  4. MRM pipeline • MRM DB. • MRM data. • MRM external data. • MRM queries. • Link to MS/MS MIAPE datasets.

  5. Time Frame

  6. Other • Finish SpHPPweb. • TPB interaction • Shared “folder”. • Add data to C-HPP wiki. • Improve computational infrastructure. • Sequence characterization. • Annotations retrieving. (non detected proteins) • Map to WG1’s protein list. (unknown proteins).

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