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CHMI 2227E Biochemistry I

CHMI 2227E Biochemistry I. Enzymes: Basic concepts. Enzymes. Enzymes. Classes of enzymes. Example: ATP: D-glucose-6 phosphotransferase (aka hexokinase). EC 2.7.1.1 2 = transferase 7 = phosphotransferase 1 = acceptor group is OH 1 = glucose binds the phosphate group. ATP. +.

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CHMI 2227E Biochemistry I

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  1. CHMI 2227EBiochemistry I Enzymes: Basic concepts CHMI 2227 - E.R. Gauthier, Ph.D.

  2. Enzymes CHMI 2227 - E.R. Gauthier, Ph.D.

  3. Enzymes CHMI 2227 - E.R. Gauthier, Ph.D.

  4. Classes of enzymes CHMI 2227 - E.R. Gauthier, Ph.D.

  5. Example: ATP: D-glucose-6 phosphotransferase (aka hexokinase) EC 2.7.1.1 2 = transferase 7 = phosphotransferase 1 = acceptor group is OH 1 = glucose binds the phosphate group ATP + D-glucose ADP + D-glucose-6-phosphate IUBMB enzyme nomenclature CHMI 2227 - E.R. Gauthier, Ph.D.

  6. 1- Oxidoreductases 2- Transferases 3- Hydrolases 4- Lyases 5- Isomerases 6- Ligases Classes of enzymes CHMI 2227 - E.R. Gauthier, Ph.D.

  7. A- + B A + B- A-B + C A + B-C A-B + H2O A-H + B-OH Y X X Y Y X A=B + X-Y A-B A-B A-B A + B A-B Classes of enzymes • 1- Oxidoreductases • 2- Transferases • 3- Hydrolases • 4- Lyases • 5- Isomerases • 6- Ligases CHMI 2227 - E.R. Gauthier, Ph.D.

  8. OxidoreductasesExample: Lactate dehydrogenase (EC 1.1.1.27) • Lactate = substrate • Pyruvate = product • NAD+/NADH = co-factor CHMI 2227 - E.R. Gauthier, Ph.D.

  9. 2. TransferasesExample: Alanine transaminase (EC 2.6.1.2) • Alanine / a-ketoglutarate = substrates • Pyruvate / L-glutamate = products CHMI 2227 - E.R. Gauthier, Ph.D.

  10. 3. HydrolasesExample: diphosphate phosphohydrolase(EC 3.6.1.1) • Pyrophosphate / H2O = substrates • Phosphate = product CHMI 2227 - E.R. Gauthier, Ph.D.

  11. 4. Lyases (aka synthases)Example: Pyruvate decarboxylase(EC 4.1.1.1) • Pyruvate = substrate • Acetaldehyde and CO2 = products CHMI 2227 - E.R. Gauthier, Ph.D.

  12. 5. IsomerasesExample: Alanine racemase(EC 5.1.1.1) • L-alanine = substrate • D-alanine = product CHMI 2227 - E.R. Gauthier, Ph.D.

  13. 6. Ligases (aka synthetases)Example: L-glutamine synthetase(EC 6.3.1.2) • L-glutamate / NH4+ = substrates • L-glutamine = product • ATP = co-factor CHMI 2227 - E.R. Gauthier, Ph.D.

  14. How do enzymes work? CHMI 2227 - E.R. Gauthier, Ph.D.

  15. Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.

  16. DGŧ DG Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.

  17. Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.

  18. Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.

  19. The « lock and key » myth… CHMI 2227 - E.R. Gauthier, Ph.D.

  20. The « lock and key » myth… CHMI 2227 - E.R. Gauthier, Ph.D.

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