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CHMI 2227E Biochemistry I. Enzymes: Basic concepts. Enzymes. Enzymes. Classes of enzymes. Example: ATP: D-glucose-6 phosphotransferase (aka hexokinase). EC 2.7.1.1 2 = transferase 7 = phosphotransferase 1 = acceptor group is OH 1 = glucose binds the phosphate group. ATP. +.
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CHMI 2227EBiochemistry I Enzymes: Basic concepts CHMI 2227 - E.R. Gauthier, Ph.D.
Enzymes CHMI 2227 - E.R. Gauthier, Ph.D.
Enzymes CHMI 2227 - E.R. Gauthier, Ph.D.
Classes of enzymes CHMI 2227 - E.R. Gauthier, Ph.D.
Example: ATP: D-glucose-6 phosphotransferase (aka hexokinase) EC 2.7.1.1 2 = transferase 7 = phosphotransferase 1 = acceptor group is OH 1 = glucose binds the phosphate group ATP + D-glucose ADP + D-glucose-6-phosphate IUBMB enzyme nomenclature CHMI 2227 - E.R. Gauthier, Ph.D.
1- Oxidoreductases 2- Transferases 3- Hydrolases 4- Lyases 5- Isomerases 6- Ligases Classes of enzymes CHMI 2227 - E.R. Gauthier, Ph.D.
A- + B A + B- A-B + C A + B-C A-B + H2O A-H + B-OH Y X X Y Y X A=B + X-Y A-B A-B A-B A + B A-B Classes of enzymes • 1- Oxidoreductases • 2- Transferases • 3- Hydrolases • 4- Lyases • 5- Isomerases • 6- Ligases CHMI 2227 - E.R. Gauthier, Ph.D.
OxidoreductasesExample: Lactate dehydrogenase (EC 1.1.1.27) • Lactate = substrate • Pyruvate = product • NAD+/NADH = co-factor CHMI 2227 - E.R. Gauthier, Ph.D.
2. TransferasesExample: Alanine transaminase (EC 2.6.1.2) • Alanine / a-ketoglutarate = substrates • Pyruvate / L-glutamate = products CHMI 2227 - E.R. Gauthier, Ph.D.
3. HydrolasesExample: diphosphate phosphohydrolase(EC 3.6.1.1) • Pyrophosphate / H2O = substrates • Phosphate = product CHMI 2227 - E.R. Gauthier, Ph.D.
4. Lyases (aka synthases)Example: Pyruvate decarboxylase(EC 4.1.1.1) • Pyruvate = substrate • Acetaldehyde and CO2 = products CHMI 2227 - E.R. Gauthier, Ph.D.
5. IsomerasesExample: Alanine racemase(EC 5.1.1.1) • L-alanine = substrate • D-alanine = product CHMI 2227 - E.R. Gauthier, Ph.D.
6. Ligases (aka synthetases)Example: L-glutamine synthetase(EC 6.3.1.2) • L-glutamate / NH4+ = substrates • L-glutamine = product • ATP = co-factor CHMI 2227 - E.R. Gauthier, Ph.D.
How do enzymes work? CHMI 2227 - E.R. Gauthier, Ph.D.
Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.
DGŧ DG Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.
Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.
Enzymes and the energy barrier CHMI 2227 - E.R. Gauthier, Ph.D.
The « lock and key » myth… CHMI 2227 - E.R. Gauthier, Ph.D.
The « lock and key » myth… CHMI 2227 - E.R. Gauthier, Ph.D.