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Fetching datasets from the Internet. Downloading Datasets. Let's Get Data. http://www.emboss.org. Downloading From The Web. $ man wget. Using wget to download PDB data-files. $ mkdir structures $ cd structures $ wget ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb1m7t.ent.Z
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Fetching datasets from the Internet Downloading Datasets
Let's Get Data http://www.emboss.org
Downloading From The Web $ man wget
Using wget to download PDB data-files $ mkdir structures $ cd structures $ wget ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb1m7t.ent.Z $ wget ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb1lqt.ent.Z $ gzip -d pdb1m7t.ent.Z pdb1lqt.ent.Z
Mirroring a dataset $ wget --mirror ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb
Only download a dataset when absolutely necessary. Consider the implications of doing so first Maxim 9.1
Smarter mirroring structures/ftp.rcsb.org/pub/pdb/data/structures/all/pdb $ wget --output-file=log --mirror --http-user=anonymous --http-passwd=email@where.ever.net --directory-prefix=structures/mmCIF --no-host-directories --cut-dirs=6 ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb
Downloading a subset of a dataset $ wget ftp://beta.rcsb.org/pub/pdb/uniformity/data/mmCIF/all/1ger.cif.Z
