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Fold difference (T2/diploid)

T2/D4. T2/D4. T2/D3. T2/D3. A. B. Fold difference (T2/diploid). *. *. C. D. *. *. *. *. *. *. Supplementary Figure S3. Carotenoid biosynthetic gene family expression is upregulated in T2 relative to D4, but not D3, under excess light.

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Fold difference (T2/diploid)

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  1. T2/D4 T2/D4 T2/D3 T2/D3 A B Fold difference (T2/diploid) * * C D * * * * * * Supplementary Figure S3. Carotenoid biosynthetic gene family expression is upregulated in T2 relative to D4, but not D3, under excess light. (A) Relative combined gene family expression (T2/diploid) by gene family under limiting light. (B) Relative combined gene family expression (T2/diploid) averaged across all 13 gene families under limiting light. (C) Relative combined gene family expression (T2/diploid) by gene family under excess light. (D) Relative combined gene family expression (T2/diploid) averaged across all 13 gene families under excess light. Expression data were derived from RNA-Seq transcript profiles. Single asterisks indicate T2 expression is significantly higher than the corresponding diploid’s expression with an unadjusted p-value < 0.05. Double asterisks indicate a significant difference with FDR < 0.05. Significance levels were determined using DESeq. Error bars represent standard error (N = 3).

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