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Advanced Bioinformatics

Advanced Bioinformatics. BIF-30806. Welcome. Content of the course. Basic Linux Perl scripting Open Bioinformatics Software Protein Motifs Protein Interactions Semantic web. NGS RNA-seq/splicing Comparative genomics Chip-Seq Project. Teachers. Jack Leunissen Harm Nijveen

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Advanced Bioinformatics

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  1. Advanced Bioinformatics BIF-30806

  2. Welcome

  3. Content of the course Basic Linux Perl scripting Open Bioinformatics Software Protein Motifs Protein Interactions Semantic web NGS RNA-seq/splicing Comparative genomics Chip-Seq Project

  4. Teachers Jack Leunissen Harm Nijveen Aalt-Jan van Dijk Edouard Severing Elio Schijlen Felipe Leal Valentim Joachim Bargsten Jose Muino Ke Lin Pierre-Yves Chibon Pjotr Prins Sandra Smit Saulo Alves Aflitos Tom de Man

  5. Grading Exercises(8) + Perl exam 30% Project Report 50% Project Presentation 20% (inter)active participation during lectures and practical sessions is highly appreciated

  6. Hours Mornings: 9 - 12 Afternoon: 13 - 17:15 Coffee/tea breaks as required

  7. Location Lectures: PC 771 Practical sessions and project work: PC 771, G 790, G 794, G 795

  8. Project Create an analysis pipeline using Perl to answer a biological question 2 weeks Small teams of ~4 students One report and presention per student

  9. Perl Introduction to the language Focus on practical use Exercises numbered 1 - 8 should to be mailed before Feb 23 to: harmn@bioinformatics.nl Written exam after one week

  10. Perl Gurus Already a Perl Guru? Then you can skip the Perl classes But: You should hand in the exercise solutions and do the written exam (easy) Overestimation of Perl skills is at your own risk...

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