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KEGG: Kyoto Encyclopedia of Genes and Genomes

KEGG: Kyoto Encyclopedia of Genes and Genomes. Susan Seo Intro to Bioinformatics Fall 2004. Purpose & Overview. KEGG. Features Example. Purpose. Developed at the Kanehisa Laboratory Integrates: current knowledge of molecular interaction networks information about genes and proteins

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KEGG: Kyoto Encyclopedia of Genes and Genomes

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  1. KEGG:Kyoto Encyclopedia of Genes and Genomes Susan Seo Intro to Bioinformatics Fall 2004

  2. Purpose & Overview KEGG Features Example

  3. Purpose • Developed at the Kanehisa Laboratory • Integrates: • current knowledge of molecular interaction networks • information about genes and proteins • information about chemical compounds and reactions

  4. PATHWAY database GENES / SSDB / KO databases COMPOUND / GLYCAN / REACTION databases Overview

  5. Parkinson’s Disease • Search the Pathway database • Explore a pathway linked with Parkinson’s disease in humans • Look more closely at the PARK2 gene

  6. Features • OC Viewer • Gene catalog • SSDB • LinkDB • Position • Amino Acid sequence • Nucleotide Sequence

  7. Conclusion The Kyoto Encyclopedia of Genes and Genomes is a vast library of information gathered from fully sequenced genomes, genes, proteins, pathways, and chemical compounds pertaining to over a hundred different species of both prokaryotes and eukaryotes

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