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Biology 12. Proteins. Proteins. Proteins are made up of the elements C, H, O, and N (but in no set ratio) Proteins are chains of amino acids (usually 75 or more) that bond together via dehydration synthesis 40% of the average human body is made up of protein. Proteins.
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Biology 12 Proteins
Proteins • Proteins are made up of the elements C, H, O, and N (but in no set ratio) • Proteins are chains of amino acids (usually 75 or more) that bond together via dehydration synthesis • 40% of the average human body is made up of protein
Proteins • The building block of Proteins are amino acids • There are three parts to an amino acid: • Amino Group (NH2 or NH3+) • Acts as a base (accepts H+) • Carboxyl Group (COOH or COO-) • Acts as an acid (donates H+) • R Group • There are 20 different possible R groups
Proteins • Amino acids bond together via dehydration synthesis • The amino acids bind together with a peptide bond • The peptide bond is formed between C and N and one water is lost (dehydration synthesis)
Proteins • When the original two amino acids form the beginning of the chain (with one peptide bond) it is call a dipeptide
Proteins • Than the chain grows to become a tripeptide
Proteins • Ultimately you end up with a polypeptide (which can have anywhere between 30 and 30,000 amino acids) • Another name for a polypeptide is protein
Proteins • Every protein is different because the order of amino acids is different • The chains come together differently due to the order of the different R groups and how they bond together • This structural difference also makes the polypeptides (proteins) functionally different
Levels of Protein Structure Primary structure: 1° • This is the first level of how proteins are formed • It is simply the order of amino acids joined together with peptide bonds • It is the amino acid sequence that determines the nature and chemistry of the protein • If you change the order of amino acids, the protein may not be able to do its job
Levels of Protein Structure Secondary Structure: 2° • This is the second step in the formation of a protein • When a peptide bond is formed, a double bonded oxygen is left over, which is partially negative (the carboxyl group: COO-) • It is attracted to the positive NH3+ amino group from other amino acids in the chain • This attraction forms a hydrogen bond • This causes the chain to twist into either a spiral called an alpha helix or a beta pleated sheet
Levels of Protein Structure Tertiary Structure: 3° • The next interactions take place between the R groups • Some R groups are reactive and will interact with other reactive R groups in the chain. These are the amino acids that are either charge or that have a sulphur atom. • The interactions (+ and – attractions and S-S bridges) will fold the molecule over into a highly specific 3-dimensional shape • It is the 3-D shape that will determine the protein’s job
Levels of Protein Structure Quaternary Structure: 4° • The last level in protein formation is not seen in all proteins • However, some proteins are actually 2 or more molecules joined to form a functional protein. They are held together with an ionic bond. • Two examples: • Insulin has 2 subunits • Hemoglobin has 4 subunits
The Whole Process • Interactions between R Groups • Peptide Bonds • Hydrogen Bonds • Ionic Bonds
Denaturation • The final shape of a protein (its tertiary or quaternary structure) is very specific and enables it to do its job/function • Any change in a protein’s shape will affect its function • Denaturation is when a protein’s tertiary structure is lost • This happens when the bonds between the R groups are broken • When a protein is denatured, the protein can’t do its job and becomes useless
Denaturation Denaturation has three common causes: • Temperature • High temperatures affect the weak hydrogen bonds and can distort or break them • This changes the structural shape • A slight increase in temperature can cause a reversible change (ex. Fever) • A high temperature increase can cause an irreversible change (ex. Cooking an egg)
Denaturation • Chemicals • Heavy metals such as lead and mercury are large atoms that are attached the R groups of amino acids • They bond to the R group and distort the protein’s shape • This is usually irreversible (they usually don’t want to ‘let go”)
Denaturation • pH • As some of the R groups are acids and some are bases, every protein has a preferred pH • Any change in pH causes a change in the acid-base R group interactions and this will change the shape of the protein
Actin & Myosin: muscle proteins Keratin: nails, hair, horns, feathers Collagen: bones, teeth, cartilage, tendon, ligament, blood vessels, skin matrix Functions of Proteins • Structural • Proteins help make up all the structures in living things
Hemoglobin Functions of Proteins • Functional • Other proteins help us to keep our bodies functioning properly and to digest our food Enzymes:are proteins that are catalysts which speed up reactions and control all cell activities.
Functions of Proteins • Food Source • Once we have used up all of our carbohydrates ad fats, proteins will be used for energy • Proteins are worth the least amount of energy per gram