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Current Applications. Multiple Sequence AlignmentPFAM:Protein families database of alignments and HMMsHMMpro at www.netid.com,(Baldi, Chauvin and Mittal-Henkle)HMMER at hmmer.wustl.edu(S.Eddy)SAM (Karplus et al.) at www.cse.ucsc.edu/research/compbio/sam.html Gene finding (GLIMMER) Motif/Promoter region finding.
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