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B. caballeronis TNe-878 (EF139185)

B. caballeronis TNe-878 (EF139185). B. caballeronis TNe-8683 (KF366440). B. caballeronis TNe-8641 (KF366439). B. caballeronis TNe-8411 (KF366438). B. caballeronis TNe-869 (KF366437). 99. 77. B. caballeronis TNe-835 (KF366436). B. caballeronis TNe-834 (JN881346).

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B. caballeronis TNe-878 (EF139185)

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  1. B. caballeronisTNe-878 (EF139185) • B. caballeronisTNe-8683 (KF366440) • B. caballeronisTNe-8641 (KF366439) • B. caballeronisTNe-8411 (KF366438) • B. caballeronisTNe-869 (KF366437) 99 77 • B. caballeronisTNe-835 (KF366436) • B. caballeronisTNe-834 (JN881346) • B. caballeronisTNe-841T (EF139186) B. kururiensisKP23T (AB024310) 98 B. kururiensisM130 (AJ238360) 81 • B. denitrificansKIS30-40T (GU171384) B. ferrariaeFeGl01T (DQ514537) B. silvaltanticaSRCL-318 (AY965241) 75 98 B. silvatlanticaPPCR2 (AY965243) 95 97 B. silvatlanticaSRMrh-20T (AY965240) B. silvatlanticaPVA5 97 76 B. heleiaSA41T (AB495123) 83 91 B. mimosarumPAS44T (AY752958) B. mimosarumBr3454 (AY533860) 99 B. sacchariIPT101T (AF263278) 86 76 87 B. oxyphilaOX01T (AB488693) B. nodosaBr3437T (AM284971) 97 89 B. nodosaBr3461 (AM284970) B. unamae MCo-762 (AY221955) 73 B. unamae MTl-641T (AY221956) B. unamae SCCu-23 (AY221957) 98 B. humiRs7T (JQ692177) 99 83 • B. bannensisE25T (AB561874) 91 B. tropica BM16 (AF312214) 92 B. tropica Ppe8T (AJ420332) 92 B. tropica MTo-293 (AY128103) B. acidipaludisSA33T (AB513180) 98 • B. diazotrophicaJPY461T (HM366717) B. sprentiaeWSM5005T (HF549035) 64 B. tuberumSTM678T (AJ302311) 80 B. sabiaeLMG 24235T (AY773186) B. phymatumGR01 (FJ560957) 98 B. phymatumSTM815T (AJ302312) B. caribensisMWAP64T (Y17009) B. hospitaLMG 20598T (AY040365) 83 66 B. terraeLMG 23368T (AB201285) 99 B. terraeTAt-0769 (FJ478406) 92 B. terraeTAt-0728 (FJ478404) B. fungorumLMG 16225T (AF215705) 55 B. megapolitanaLMG 23650T (AM489502) 77 B. phenoliruptrixAC1100T (AY435213) 88 B. graminisC4D1MT (U96939) B. phytofirmansPsJNT (AY497470) B. sediminicolaLMG 24238T (EU035613) 70 98 • B. rhynchosiaeWSM3937T (EU219865) 97 B. terricolaLMG 20594T (AY040362) 81 B. xenovorans TCo-382 (EF139187) 91 90 B. xenovorans TCo-26 (EF139188) 76 B. xenovorans LB400T (U86373) 77 B. caledonicaLMG19076T (AF215704) B. bryophilaLMG 23644T (AM489501) 98 B. ginsengisoliLMG 24044T (AB201286) 78 B. sartisoliLMG 24000T (AF061872) B. phenaziniumLMG 2247T (U96936) 85 86 B. soliLMG 24076T (DQ465451) • B. symbioticaJPY345T (HM357233) 81 B. caryophylliATCC 25418T (AF215704) 68 B. sordidicolaLMG 22029T (AF512826) 67 B. glatheiATCC 29195T (Y17057) • B. zhejiangensisOP-1T (HM802212) 73 72 B. grimmiaeR27T (JN256678) 99 B. andropogonisLMG 2129T (X67037) Burkholderia endofungorumHKI456T (AM420302) B. rhizoxinicaHKI454T (AJ938142) 99 B. malleiNCTC 10247 (NC_009080) 91 B. malleiATCC 23344T (AF110188) B. malleiSAVP1 (NC_008785) 93 B. pseudomalleiK96243 (NC_006350) 56 B. pseudomallei668 (NC_009074) B. thailandensisE264T (U91838) B. oklahomensisEO147 (NZ_ABBF00000000) 93 B. plantariiLMG 9035T (U96933) 82 86 B. gladioliLMG 2216T (X67038) 83 B. glumaeBGR1 (NC_012724) B. stabilisLMG 14294T (AF148554) 96 B. pyrrociniaLMG 14191T (AB021369) B. diffusaLMG 24065T (AM747629) 83 90 B. ambifariaAMMDT (AF043302) B. ambifariaIOP40-10 (NZ_ABLC00000000) B. lata 383 (NC_007510) 96 B. contaminansI29B (GQ397111) B. arborisLMG 24066T (AM747630) 75 B. cenocepaciaHI2424 (NC_008542) 80 B. cenocepaciaAU1054 (NC_008060) 88 79 B. seminalisLMG 24067T (AM24031) B. cenocepaciaMC0-3 (NC_010508) 76 B. ambifariaMC406 (NC_010551) B. cepacia ATCC 25416T (AF097530) 88 B. metallicaLMG 24068T (AM747632) B. anthinaR4183 (AJ420880) B. multivoransATCC 17616 (NC_010804) 94 78 B. ubonensisBu (NZ_ABBE00000000) B. latensLMG 24064T (AM747628) 73 B. vietnamiensisMMi-302 (HQ652505) 95 B. cenocepaciaJ2315T (AF148556) B. vietnamiensisG4 (NC_009256) B. vietnamiensisTVV75T (AF097534) 81 C. necatorH16 (NC_008313) 86 98 C. necatorJMP134 (NC_007347) Cupriavidus metalliduransCH34T (NC_007973) R. solanacearum UW551 (NZ_AAKL00000000) 100 R. solanacearumGMI1000 (NC_003295) R. pickettii12J (NC_010682) 96 Ralstonia pickettii12D (NC_012856) 99 0.1 Figure S1. Maximum likelihood tree based on the 16S rRNA gene sequences of Burkholderia species. The accession numbers of the sequences used in this analysis are shown in parenthesis. The robustness of the ML topologies was evaluated using a Shimodaira-Hasegawa (SH)-like test (Anisimova & Gascuel, 2006), which is shown at branches nodes. The bar represents the number of expected substitutions per site under the GTR+G model.

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