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Chapter 7: DNA structure and replication. Fig. 7-1. FROM GENE TO PROTEIN Replication : DNA-dependent DNA synthesis; DNA polymerase and associated proteins; DNA template, dNTPs Transcription : DNA-dependent RNA synthesis; RNA polymerase and associated proteins; DNA template, NTPs
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FROM GENE TO PROTEIN Replication: DNA-dependent DNA synthesis; DNA polymerase and associated proteins; DNA template, dNTPs Transcription: DNA-dependent RNA synthesis; RNA polymerase and associated proteins; DNA template, NTPs Translation: RNA-dependent polypeptide synthesis; ribosome and associated molecules; mRNA, ribosomes, aminoacyl-tRNA
Avery, MacLeod & McCarty (1944): Griffith’s “transforming principle” is DNA Fig. 7-3
Background information available • to Watson & Crick in construction • of their double-helical DNA model • E. Chargaff’s “rule” (A=T, G=C)
Background information available • to Watson & Crick in construction • of their double-helical DNA model • E. Chargaff’s “rule” (A=T, G=C) • Wilkins & Franklin’s x-ray diffraction • data (suggested strongly helical, • probably double-helical structure)
Major groove Minor groove Fig. 7-8
DNA double helix is stabilized by: • Hydrophobic interactions among bases • 2. Hydrophilic interactions of PO4 with aqueous environment • 3. Hydrogen bonds between complementary • bases (A-T pair, two H bonds; G-C pair, • three H bonds)
Potential modes of DNA replication Fig. 7-12
5’-3’ synthesis of DNA proceeds by 3’ extension and complementary base pairing Fig. 7-15
Replication fork dynamics creates polarity problems in lagging strand synthesis Fig. 7-16
Replication fork dynamics depends upon cooperative activities of a variety of proteins Fig. 7-18
Chromosome replication is carried out by expansion of “bubbles” Fig. 7-22
DNA synthesis creates problems at chromosome ends Ever-shortening 5’ ends Fig. 7-24
Telomerase is special DNA polymerase that maintains chromosome ends Fig. 7-25 Telomeres consist of high-copy number, simple sequence repeats
Human haploid genome 1 m of DNA (about 2 m DNA per somatic cell*) (about 4.3 cm DNA per chromosome) *~1013 somatic cells per average human ~ 2 x 1013 m of DNA per average human (nearly 100 round trips to the sun!!)
Human haploid genome 1 m of DNA (about 2 m DNA per somatic cell*) (about 4.3 cm DNA per chromosome) *~1013 somatic cells per average human ~ 2 x 1013 m of DNA per average human (nearly 100 round trips to the sun!!) Average human nucleus ~ 6 μm diameter Eukaryotic DNA is densely packaged