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Motif detection and Screening

Motif detection and Screening. 09112006. OVERVIEW. Sequence. Blast. Identify homologs. INCLUsive. Select Intergenics. Motif Sampler/ RSA. Phylogenetic footprinting. Motif Scanner/ RSA. Genome wide screening. SELECTION INTERGENIC SEQUENCES. SELECTION INTERGENIC SEQUENCES.

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Motif detection and Screening

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  1. Motif detection and Screening 09112006

  2. OVERVIEW Sequence Blast Identify homologs INCLUsive Select Intergenics Motif Sampler/ RSA Phylogenetic footprinting Motif Scanner/ RSA Genome wide screening

  3. SELECTION INTERGENIC SEQUENCES

  4. SELECTION INTERGENIC SEQUENCES

  5. SELECTION INTERGENIC SEQUENCES

  6. Motif Detection

  7. OVERVIEW Sequence Blast Identify homologs INCLUsive Select Intergenics Motif Sampler/ RSA Phylogenetic footprinting Motif Scanner/ RSA Genome wide screening

  8. Motif Detection: Gibbs

  9. Motif Detection: Gibbs

  10. Motif Detection: Gibbs

  11. Motif Detection: Gibbs Consensus: TTGATCTAGATCAA Regular expression

  12. Motif Detection: RSA

  13. Motif Detection: RSA

  14. Motif Detection: RSA

  15. Motif Detection: RSA

  16. Motif Detection: RSA

  17. OVERVIEW Sequence Blast Identify homologs INCLUsive Select Intergenics Motif Sampler/ RSA Phylogenetic footprinting Motif Scanner/ RSA Genome wide screening

  18. CONSENSUS

  19. CONSENSUS

  20. REGULAR EXPRESSION

  21. MotifScanner

  22. MotifScanner score consensus hit start stop

  23. EcoCYC

  24. EcoCYC cydA encodes a terminal oxidase Its regulation by FNR was to be expected

  25. EcoCYC yejG is a novel protein with unknown function But from in silico analysis you know it might be regulated by O2

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