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Supplementary Figure 1, Postnikova et al. Mol Gen Genom Alignment of the alfalfa bHLH domain. Aromatic amino acids (aa) FYW (blue), basic aa KRH (red), aliphatic aa ILMV (green), hydrophilic aa GPST (yellow). VIIIc. XIV. IX. XI. X. Va. XII. VIIa+b.
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Supplementary Figure 1, Postnikova et al. Mol Gen Genom Alignment of the alfalfa bHLH domain. Aromatic amino acids (aa) FYW (blue), basic aa KRH (red), aliphatic aa ILMV (green), hydrophilic aa GPST (yellow).
VIIIc XIV IX XI X Va XII VIIa+b IVa Ib XV II Vb IVc IIIa+b IVd IIb Ia Supplementary Figure 2, Postnikova et al. Mol Gen Genom Phylogenetic analysis of the bHLH proteins from A. thaliana (green circles), M. truncatula (blue circles) and M. sativa (red circles). Tentative locations of the previously described A. thaliana subfamilies are indicated above the tree in Roman numerals.
IIa IIb Ib IXc IVa,b VI Ia,b VIIa VIIa Xa,b IIIe IXa,c 11 IIa VIIIb Xa,b Xa,b Vb IIIb,c,d VIa Supplementary Figure 3, Postnikova et al., Mol Gen Genom. Phylogenetic analysis of the ERF proteins from A. thaliana (green circles), M. truncatula (blue circles) and M. sativa (red circles). Tentative locations of the previously described A. thaliana ERF subfamilies (Roman numerals) indicated in squire brackets. Novel alfalfa clade numbered as in Fig. 2 is highlightedin yellow.
V VI-2 IV-2 VIII-1 VI-1 III-2 VII-1 III-1 VII-2 III-3 IX-1 I-1 I-4 IV-2 II-1 1,2 II-3 I-2 Supplementary Figure 4, Postnikova et al., Mol Gen Genom. Phylogenetic analysis of the NAC proteins from A. thaliana (green circles), M. truncatula (blue circles) and M. sativa (red circles). Tentative locations of the previously described A. thaliana NAC subfamilies (Roman numerals) indicated in squire brackets. Novel alfalfa clade numbered as in Figure 4 is highlighted in yellow.
Supplementary Figure 5, Postnikova et al., Mol Gen Genom Alignment of alfalfa and M. truncatula NAC proteins from the novel clade with representative TFs of A. thaliana NAC
III IIb IId IIe ICT INT IIc IIa Supplementary Figure 6, Postnikova et al., Mol Gen Genom. Phylogenetic analysis of the WRKY proteins from A. thaliana (green circles), M. truncatula (blue circles) and M. sativa (red circles). Tentative locations of the previously described A. thaliana subfamilies are indicated above the tree in Roman numerals. INT and IC represent the N-terminal and C-terminal domains from the Group I.