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Ch.6: Introduction to Metabolism. Metabolism, Transformation of energy, ATP laws of thermo-dynamics Enzymes, Controls of metabolism. YIKES!!! Metabolic pathways. What is Metabolism? Put the following words into one of these two categories:. Anabolic Catabolic
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Ch.6: Introduction to Metabolism Metabolism, Transformation of energy, ATPlaws of thermo-dynamics Enzymes, Controls of metabolism
What is Metabolism?Put the following words into one of these two categories: AnabolicCatabolic exergonic, endergonic, nonspontaneous, spontaneous, -ΔG, +ΔG, uphill, downhill, respiration, photosynthesis ATP ADP + Pi, ADP + Pi ATP loss of free energy (G), gain of free energy (G) products have greater G than reactants, reactants have greater G than products absorbs free energy from surroundings, releases free energy to surroundings hydrolysis, condensation/dehydration ΔG= -686 kcal/mol, ΔG= 686 kcal/mol C6H12O6 + O2 H20 + CO2, H20 + CO2 C6H12O6 + O2
What is Metabolism?Put the following words into one of these two categories: AnabolicCatabolic exergonic, endergonic, nonspontaneous, spontaneous, -ΔG, +ΔG, uphill, downhill, respiration, photosynthesis ATP ADP + Pi, ADP + Pi ATP loss of free energy (G), gain of free energy (G) products have greater G than reactants, reactants have greater G than products absorbs free energy from surroundings, releases free energy to surroundings hydrolysis, condensation/dehydration ΔG= -686 kcal/mol, ΔG= 686 kcal/mol C6H12O6 + O2 H20 + CO2, H20 + CO2 C6H12O6 + O2
ATP’s Structure It is a Nucleotide:Base Sugar Phosphates Hydrolysis of ATP into ADP
Energy Coupling: The use of an exergonic process to drive an endergonic reaction. • Ex: Adding a phosphate group (Pi) to molecules makes them unstable and usually highly reactive • Where does that Pi come from?
Example coupling reaction • ATP’sphosphatemakes GLU more reactive, this is phosphorylation/ energy coupling Note: what is the second law of thermodynamics? Exergonic
What about this example? A + B AB ΔG = 9.0 kcal/mol ATP+ H2O ADP+Pi ΔG = -7.3 kcal/mol
Closed system Using energy gradients (energy at each step) to help do work. Staying away from equilibrium. (like respiration!) how is a human an open system? Open system
Enzymes • Examples: hexokinase, sucrase, catalase, pepsin, trypsin---all are specific • Substrate(s) enzyme Product(s) The action can be catabolic or anabolic. “Induced fit” not rigid—like a hand shake • http://scholar.hw.ac.uk/site/biology/activity7.asp?outline=no
Negative G= a loss of free Energy The products have less energy than the reactants, EXERGONIC
Enzyme rate and rate of reaction • How does the amount of enzyme affect the rate of the reaction? • How does the amount of enzyme affect the rate of an enzyme? • How does the amount of substrate affect the rate of the reaction? • How does the amount of substrate affect the rate of the enzyme? • What are the differences between competitive and noncompetitive inhibitors. • What is cooperativity? How might this be involved with negative feedback?
Free Energy and Metabolism: • C6H12O6 + 6O2 6CO2 + 6H2O • G = - 686 kcal/mol (-2870 kJ/mol) • Is this Exergonic or Endergonic?• What is this reaction? • 6CO2 + 6H2O C6H12O6 + 6O2 • G = +686 kcal/mol (+2870 kJ/mol) • This reaction is photosynthesis. • Where is the Energy coming from to drive this nonspontaneous reaction?
Energy transformations • 1. First law of thermodynamics:Conservation of energy—it is not lost or destroyed. There is a constant amount in the universe. (what form has the lowest Energy?) • 2. Second law of thermodynamics: Entropy(S), every energy transfer increases entropy of the universe.
G(free energy)=H(total Energy) –TS This change in Energy can be harnessed to do work! Kinetic (KE) and Potential energy (PE)
Toothpickase Demonstration • How many subunits does the enzyme have? __ • What is the quaternary structure for your enzyme? ____________ • Where is your active site? ______________ • What are the products of the reaction of toothpickase with its substrate? __________ • Is the enzyme changed in any way throughout the reaction? ________
Calculating the V-Max of toothpick-ase under normal conditions
ENZYMES:pH and temperature sensitive • Most will DENATURE when out of range
Competitive inhibitor • Competes forthe active site • Non-competitive inhibitor • Doesn’t compete with the active site
Allosteric enzymes: Activators and Inhibitors (active forms, inactive forms)
Fig 6.16 • Feedback inhibition • Pathwaysswitching off because of an end product acting as an allosteric inhibitor
Allosteric again • Cooperativity: the substrate itself “turns the enzyme on” / activates it