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HSC RNAseq Initial Results

HSC RNAseq Initial Results. Ariel Paulson. Data QA/QC. \dm3solexa-analysisLi_LinhengaveLi_Linheng-2011-07-25BB027YABXXfastqcfastqc_plots.htm. Col2_3GFP. Mega5FU. READS TRIMMED TO 70bp long. QC FAIL. NO MATCH. TRUE NO MATCH. MULTI ALIGN. UNIQUE ALIGN. UNIQUE AT 0MM.

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HSC RNAseq Initial Results

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  1. HSC RNAseqInitial Results Ariel Paulson

  2. Data QA/QC \\dm3\solexa-analysis\Li_Linheng\ave\Li_Linheng-2011-07-25\BB027YABXX\fastqc\fastqc_plots.htm Col2_3GFP Mega5FU READS TRIMMED TO 70bp long

  3. QC FAIL NO MATCH TRUE NO MATCH MULTI ALIGN UNIQUE ALIGN UNIQUE AT 0MM TAGS % READS

  4. Alignment using Bowtie 0.12.7 + Tophat, 1.3.1, only allow for UM reads. Broken into 2 segments @ 35bp each, 2mm each

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