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Pipeline Analysis of Biological Data with Taverna and R

Pipeline Analysis of Biological Data with Taverna and R. Portal (web page). Pipeline Analysis of Biological Data with Taverna and R. Integrating portal and Taverna using NeISS Project (enactment of Taverna workflows via a portal): a portlet for selecting a T2 workflow

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Pipeline Analysis of Biological Data with Taverna and R

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  1. Pipeline Analysis of Biological Data with Taverna and R

  2. Portal (web page) Pipeline Analysis of Biological Data with Taverna and R • Integrating portal and Taverna using NeISS Project (enactment of Taverna workflows via a portal): • a portlet for selecting a T2 workflow • a portlet for monitoring the status of the job submitted to a T2 Server and fetching results • a servlet for serving files that contain individual result data and the result Baclava file with all results of a workflow run. • Available for Liferay, Sakai etc • Workflow 1 • Workflow 2

  3. Pipeline Analysis of Biological Data with Taverna and R • Integrating Taverna and Bioconductor using Rshell service: • Allows calling R scripts on an R server • The R server must have pre-installed the Rserve package and it must be loaded in both scripts • Workflow 1 • Workflow 2 • R script using “puma” for analysis • R script using “affy” for analysis

  4. Pipeline Analysis of Biological Data with Taverna and R • Requirements: • Server with admin privilledges • Tomcat installed • Open source java portal (Liferay?) • Taverna 2.2 • R • Rserve package • Bioconductor packages (puma, etc) Links http://www.mygrid.org.uk/dev/wiki/display/portals/Home http://rosuda.org/Rserve/ http://www.liferay.com/

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