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Analysis of Germination in Tomato Seeds. Tammy Chan Department of Biology Mentor: Dr. Hiro Nonogaki (Horticulture). Importance of tomato seeds. Agriculture and food source. Carries genetic information. Antioxidant. Tomatina.
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Analysis of Germination in Tomato Seeds Tammy Chan Department of Biology Mentor: Dr. Hiro Nonogaki (Horticulture)
Importance of tomato seeds • Agriculture and food source • Carries genetic information • Antioxidant • Tomatina http://www.umassvegetable.org/images/soils_crops_pest_mgt/crop/tomato1.jpg Modified from: http://groupenadatoulon.lautre.net/IMG/jpg/Tomato-gene.jpg Modified from: http://upload.wikimedia.org/wikipedia/commons/8/88/Bright_red_tomato_and_cross_section02.jpg http://www.bereagardens.org/images/tomato_field.jpg http://www.telegraph.co.uk/news/graphics/2006/12/29/yearpix/060830tomatina.jpg
Seed Morphology Endosperm Testa Embryo
Opposing Forces of Seed Germination Embryo Growth Potential Mechanical Resistance
Gal Gal — — - - Man — Man — Man — Man — Man — Man — Man Mechanical Resistance Testa Radicle Endosperm
Gal Gal — — - - Man — Man — Man — Man — Man — Man — Man Endosperm Cap Composition α-Galactosidase β - Mannanase β - Mannosidase
RNA Polymerase RNAi Start Stop Antisense Sense DNA
antisense RNAi LeMAN2 mRNA Interference Hypothesis: The endosperm cap of a tomato seed is weakened by the function of LeMAN2 mannanase during germination.
Characterization of RNAi plants To check mRNA: • Tissue Printing To check enzyme activity: • Gel Diffusion Assay
Tissue Printing Positively-charged membrane Half seed Paper towel
AP Antibody DIG DIG DIG DIG DIG LeMAN2 RNA probe Detection Substrate Tissue Printing RNA Membrane
Tissue Printing WT Vector RNAi WT Vector RNAi
Gel Diffusion Assay Endosperm Cap Radicle
Gel Diffusion Assay Results Standard Wildtype Vector RNAi
Puncture Force Analysis Endosperm cap RNAi Radicle Tip Puncture Force (N) WT Imbibition Time (h) Texture analyzer Chen and Bradford (2000) Plant Physiol 124: 1265-1274
H2O Acknowledgments Dr. Kevin Ahern Howard Hughes Medical Institute Dr. Hiro Nonogaki Seed Biology Lab Dr. Po-Pu (Eric) Liu Dr. Masa Asahina Jessica Kristof Jing Sun Jennifer Coppersmith Me Jing Jen Hiro