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Tutorial 7. Genome browser. Genome browser. Free, open source, on-line browser for genomes Contains ~100 genomes, from nematodes to human. Many tools that can be used to analyze genomic data. Genome browser. http://genome.ucsc.edu/. How to find a gene of interest?. clade. genome.
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Tutorial 7 Genome browser
Genome browser • Free, open source, on-line browser for genomes • Contains ~100 genomes, from nematodes to human. • Many tools that can be used to analyze genomic data
Genome browser http://genome.ucsc.edu/
clade genome Genome assembly location Gene name OR
Information about the gene Sequences +Links to other databases
Expression data Structural information
RefSeq id Other names Summary on the gene Genomic position Gene length Sequences
mRNA length Protein sequence, mRNA sequence
Zooming in can help us identifying alternative splicing events
Clade, genome, assembly Group and track “Known genes” table position Choose “sequence”
4. Suggest a way to discover exons without searching for mRNA
5. Which animo acid(s) will join the protein if the termination codon will be mutated?
9. How many polyadenylation sites are known on the CFTR gene?