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Using workspaces on nanoHUB

Using workspaces on nanoHUB.org. Michael McLennan Software Architect Network for Computational Nanotechnology. Violin. File server. What is a workspace?. Full-featured Linux desktop For tool developers For researchers Accessible from any web browser

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Using workspaces on nanoHUB

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  1. Using workspaces on nanoHUB.org Michael McLennanSoftware ArchitectNetwork for Computational Nanotechnology

  2. Violin File server What is a workspace? • Full-featured Linux desktop • For tool developers • For researchers • Accessible from any web browser • Still running after you close your browser • Access to Grid resources • File storage provided by nanoHUB

  3. Requesting workspace access • Given automatically to tool developers

  4. Requesting workspace access • Given to others on a case-by-case basis • Give us a good reason: • How are you affiliated with NCN? • What are you doing?

  5. “my tools” list on “my nanoHUB” page Launching workspaces http://www.nanohub.org/tools/workspace

  6. Close the browser Still running, and listed under “my sessions” Accessing running workspaces

  7. Close the workspace Closes the session Closing workspaces

  8. Click and drag Type in a new size Press Tab Resize the screen

  9. Pop out as a separate window Get rid of this header and see more of the workspace Solve problem of mouse trails e.g., MacOSX/Firefox

  10. Pop out as a separate window Click Popout again to pop back in This area goes blank. Closing this window also closes the popup.

  11. See same screen at same time Check this if you don’t want to share control Enter the login for your friend Share your screen myfriend

  12. Developing tools • See instructions: • in your project area at wiki/GettingStarted • Subversion tutorial • Rappture tutorial • Use Subversion to check out project source code • svn checkout https://repo.nanohub.org/svn/app-qdot/trunk app-qdot • Edit, compile, test • cd src • make install • cd ../rappture • vi tool.xml • rappture

  13. Downloading Files • Easy way to download files: • exportfile tool.xml • exportfile examples/*

  14. Uploading files • Easy way to upload files: • importfile src.tgz

  15. Uploading files • Easy way to upload files: • importfile src.tgz • importfile mesh.dat doping.dat

  16. Using webdav to access files Browse your nanoHUB files on any Windows, Macintosh, or Linux desktop • On Microsoft Windows: • Go to My Network Places • Click Add a network place • Internet or network address:https://webdav.nanohub.org

  17. Next time, use this shortcut file Log in with your nanoHUB username and password Using webdav to access files Browse your nanoHUB files on any Windows, Macintosh, or Linux desktop See this page on nanoHUB for instructions on other platforms Drag files in and out

  18. your nanoHUB login Using sftp to access files sftp mmclennan@sftp.nanohub.org sftp mmc@mmc.rcac.purdue.edu

  19. Violin Accessing the grid spice3 Launch jobs on the grid If you would have typed… spice3 –b indeck > out.dat …then submit the job to the grid as: submit spice3 –b indeck > out.dat submit --venue hamlet spice3 –b indeck > out.dat

  20. More Information • Pick an editor: • vi • emacs • nano • xedit Linux tutorial online: http://www.ee.surrey.ac.uk/Teaching/Unix/

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