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PROTEIN SYNTHESIS. GENES & PROTEINS. Garrod : “inborn errors of metabolism” Linked genes & phenotypes Alkaptonuria – black urine, inherited, inability to break down alkapton Beadle & Tatum : “one gene – one enzyme” Experimented with Neurospora crassa
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PROTEIN SYNTHESIS
GENES & PROTEINS Garrod: “inborn errors of metabolism” • Linked genes & phenotypes • Alkaptonuria – black urine, inherited, inability to break down alkapton Beadle & Tatum: “one gene – one enzyme” • Experimented with Neurospora crassa • 3 classes, all unable to synthesize arginine (a.a.) Revision: “one gene – one polypeptide” • not all gene products are enzymes
Each mutant unable to synthesize one of the necessary enzymes for one step in the arginine pathway
GENE TO PROTEIN: OVERVIEW mRNA TRANSCRIPTION CODON TRIPLET CODE PRIMARY TRANSCRIPT TRANSLATION RNA PROCESSING TEMPLATE STRAND
TERMINOLOGY Transcription: DNA → RNA Translation: mRNA → protein mRNA: carries genetic “code” from DNA to ribosome RNA processing: yields finished mRNA Primary transcript: initial RNA transcript Triplet code: genetic instructions as a series of 3 nucleotides Template strand: DNA strand that is transcribed Codons: mRNA base triplets
PROKARYOTIC CELL • No processing • No nuclear membrane • Transcription & translation • occur simultaneously Eukaryotic cell
CRACKING THE GENETIC CODE • Nirenberg – 1st codon, UUU for phenylalanine • Redundancy but no ambiguity • Reading frame – group of 3 nucleotides, must be read in order • mRNA nucleotides read from left to right (5’-3’) in groups of 3 • Message written w/o spaces but read as a series of non-overlapping 3 letter words (codons). • Summary: Genetic information is encoded as a sequence of • non-overlapping base triplets or codons, each of which is translated into a specific amino acid
STAGES OF TRANSCRIPTION INITIATION ELONGATION TERMINATION
INITIATION • RNA polymerase binds • to promoter • DNA strands unwind • Polymerase initiates RNA • synthesis at the start • point
ELONGATION • Polymerase moves downstream, unwinding the DNA & elongating the RNA transcript 5’→3’ • DNA strands reform double helix
TERMINATION • Polymerase transcribes terminator sequence which signals end of transcription unit • RNA transcript released and polymerase detaches
Transcription factors – mediate the binding of RNA polymerase and the initiation of transcription Transcription initiation complex – assembly of transcription factors and RNA polymerase TATA box – crucial promoter DNA sequence for forming the Initiation complex
PROCESSING • List 4 components of mRNA processing • Explain how tRNA is activated
RNA PROCESSING mG cap Poly A tail
RNA PROCESSING Introns removed Exons spliced
1) Pre-mRNA combines with small nuclear ribonucleoproteins (snRNPs) and other proteins → spliceosome 2) Within spliceosome, snRNA base-pairs with nucleotides at ends of intron 3) RNA transcript cut to release intron and the exons are spliced
TERMINOLOGY • Ribozymes – RNA molecules that function as enzymes • Alternative RNA splicing – one gene, multiple products depending on which segments are treated as exons • Domains – independently folding part of a protein, discrete structural & functional regions; one domain active site, another attachment site
tRNA • Small 75-85 nucleotides • Anticodon • Amino acid attachment • site (CCA) • Processed in cytoplasm • Transcribed in nucleus