Methods

1. Novel 8-Heterocyle Substituted Tetracyclines are Potent and Broad Spectrum Antibacterial Agents with Oral Bioavailability X. XIAO,* Y. DENG, C. SUN, C. CHEN, D. HUNT, R. CLARK, C. FYFE, W. O’BRIEN, T. GROSSMAN, J. SUTCLIFFETetraphase Pharmaceuticals, Inc., Watertown, MA Poster F-1526 Contact: Leland Webster Tetraphase Pharmaceuticals, Inc. lwebster@tphase.com 52ndAnnual ICAAC 9-12 September, 2012 San Francisco, CA Abstract Methods Results Results Results Table 1. In vitroantibacterial activity of 7-chloro-8-heterocyclyltetracycline analogs Table 3. In vitro antibacterial activity of 7-R-8-(N-methyl-2-pyrrolidinyl)tetracycline analogs Background: Fully synthetic tetracyclines expand the chemical diversity of the tetracycline class and have the potential to overcome tetracycline resistance. A range of heterocyclic substituents was incorporated at the C-8 position, which has been one of the least accessed positions on the tetracycline scaffold. The resulting new tetracycline analogs displayed potent antibacterial activities against a broad range of pathogens including those with various tetracycline resistance mechanisms. A number of these 8-heterocycle substituted tetracyclines also demonstrated promising oral bioavailability in rodents. Method: Novel 8-heterocycle substituted tetracycline analogs were synthesized from a properly substituted D-ring precursor and an AB-ring intermediate via a tandem Michael-Dieckmann annulation. These new analogs’ in vitro antibacterial activities were evaluated by susceptibility testing according to CLSI guidance. Compound evaluation included susceptibility of strains expressing tetracycline-resistant genes conferingribosomal protection tet(M) or efflux (tet(K) or tet(A)). In vivo efficacy was assessed in a mouse septicemia model against Staphylococcus aureus ATCC 13709. Results: Antibacterial activity of representative 8-heterocycle substituted tetracyclines Conclusions: Novel tetracycline analogs with heterocyclic substituents at the C-8 position displayed potent antibacterial activities against a broad range of Gram-positive and Gram-negative pathogens including those with various tetracycline resistance mechanisms. When administered by the oral or intravenous route, the potent in vitro activity translated into promising in vivo efficacy in a murine septicemia model. Selected lead compounds from this novel tetracycline series are undergoing further development. SA: S. aureus; EF: E. faecalis; SP: S. pneumoniae; EC: E. coli; AB: A. baumannii; PA; KP: K. pneumoniae; SM, S. maltophilia. Table 4. Invivo antibacterial activity of 7-R-8-(2-pyrrolidinyl)tetracycline analogs Methods Bacterial Strains. Strains with defined tetracycline resistance mechanisms were obtained from M. Roberts (University of Washington, Seattle, WA). Other strains were from the American Type Culture Collection (ATCC) or Clinical Microbiology Institute (Wilsonville, OR). In vitro Susceptibility. Compounds were dissolved in water and assayed in microtiter plates according to CLSI methodology.1 Mouse Systemic Infection Studies. Mice (n = 6) received treatment viaoral gavage (PO) or intravenous (IV) injection 1 hour post intraperitoneal (IP) infection. Percent survival was calculated at termination of study (48 hrs post-dose). Materials. 8-Heterocycle substituted tetracycline analogs were synthesized from appropriately substituted and protected D-ring precursors (such as 6) and the bicyclic enone72via a Michael-Dieckmann annulation. A typical synthesis of the 7-chloro-8-(2-pyrrolidinyl)tetracycline analogs is shown in Scheme 1. Scheme 1. Synthesis of 7-chloro-8-(2-pyrrolidinyl)tetracycline analogs Table 2. In vitroantibacterial activity of 7-chloro-8-(2-pyrrolidinyl)tetracycline analogs Conclusions • A range of heterocyclic substituents was incorporated into the tetracycline scaffold at the C8 position using the Tetraphase total synthesis approach. Coupled with substitutions at C7, a series of novel 7,8-disubstituted tetracycline analogs was prepared with increased structural diversity and the potential to overcome tetracycline resistance. • Among the C8 heterocyclic substituents investigated, the pyrrolidinering was found to be preferred for optimal antibacterial activity. • A number of the new analogs, especially A2, A17, and A24, are highly potent against a broad range of Gram-positive and Gram-negative pathogens in vitro. These compounds have also displayed promising in vivoactivity when dosed IV and PO. • Several lead compounds from this novel chemical series have demonstrated promising oral bioavailability in PK studies and have been advanced into further preclinical and clinical development. References & Notes Clinical and Laboratory Standards Institute (CLSI). Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically; Approved Standard—Ninth Edition. CLSI document M07-A9. Clinical and Laboratory Standards Institute, 940 West Valley Road, Suite 1400, Wayne, Pennsylvania 19087-1898 USA, 2012 M.G. Charest, C.D. Lerner, J.D. Brubaker, D.R. Siegel, A.G. Myers, Science, 308, 395 (2005). We thank Dr. C-H Chen and his colleagues at WuXiApptec for medicinal chemistry support to this program. Printed by