1 / 37

Summary from Last Class

Summary from Last Class. Introduction to CIDER Opt Out Security and Auditing User responsibilities Definition of Project Data privileges Process workflows – user activation & project creation Session Timeout . Quiz Results. Review Quiz. Q-1

quang
Download Presentation

Summary from Last Class

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Summary from Last Class • Introduction to CIDER • Opt Out • Security and Auditing • User responsibilities • Definition of Project • Data privileges • Process workflows – user activation & project creation • Session Timeout

  2. Quiz Results

  3. Review Quiz • Q-1 • What trainings are mandatory for a user to activate his/her user account in CIDER? • Q-4 • As a Washington University user, what should you do in the event of you losing OR compromising the downloaded data from CIDER? • Q-8 • A user can query and view clinical data without using a project. - True/ False

  4. Agenda for Today • Introduction to Menus • Introduction to Dashboard • Introduction to Vocabulary Interface • Types of Queries in CIDER • Use of shared and parameterized query • CIDER Application demo • Hands on Lab • Quiz • Q&A

  5. Dashboard • Dashboard is the page on which users would be taken to upon successful login • All items available to user are organized on this page under the Explorer • Can filter/search for a particular item • Can customize number of records per page • Pagination enabled at the top

  6. Dashboard Dashboard

  7. Vocabulary Interface • BJC uses a custom coding system based on SNOMED 1993 • It is called MED – Medical Entities Dictionary • Vocabulary Interface establishes the mapping b/w standard vocabularies • Permissible values can be searched and selected while forming queries • The lab unit of measure, lab specimen type and number of occurrences next to the codes

  8. Vocabulary Interface Vocabulary Interface

  9. Vocabulary Interface Demo • Provides Permissible Values (PVs) for clinical variables in • Demographics • Visits • Lab Tests • Medications • Documents

  10. Demographics • Gender • Ethnic Origin • Race       

  11. Visits • Patient Type • Discharge Service • Admitting Service • Facility • Procedure Code • Diagnosis Code

  12. Lab Tests • Specimen Type • Laboratory Procedure Type • Facility • Laboratory Test Type

  13. Medications • Medication • Medication Order Route • Medication Component Route • Medication Component Type • Frequency

  14. Documents • Document – can do ‘google like’ search • Document Name (Type) • Facility  

  15. Introduction to Queries • Two types • Discover patient cohorts • Obtain patient data

  16. How to use Shared Queries • Shared and Parameterized Queries • Introduction • Selecting permissible values • Adding permissible values • Run query interactively or in background • History available under Recent Queries

  17. Application Demo • Find patients with a particular Diagnosis • Find patients with a particular Procedure • Find patients having a Lab Test done • Find patients who had taken a particular Medication

  18. Hands on Lab-2 Use queries from Shared Queries to find out the following for an unspecified project: • Find the number of patients with Type-2 Diabetes • Find the number of patients with Hypertrophic Cardiomyopathy (HCM) • Find number of patients with elevated levels of Troponin ( level > 0.2 nanograms per milliliter )

  19. Quiz-2 • Please write your First name and Last Name on the quiz answer sheet to get proper credit • Please circle the best answer choice for each question • Please turn in the completed assignments to me before the end of the class • We will go over the answers and you will get your answer papers graded in the next class

  20. Take Home Assignment • Identify whether there are enough patients to conduct a study for your project and report the results by next class OR • Find the number of patients over the age 40 with breast cancer diagnosed. Breast Cancer ICD-9 codes are as follows. [ICD-9 = 174 ->174.9 and ICD-9 = 233.0) AND • Review CIDER help pages for Lab-3 • Working with Workflows http://wikip2m1.cbmi.wucon.wustl.edu/ciderwiki/

  21. Appendix CIDER Screen shots

  22. Menu Options My Dashboard My Profile

  23. Menu Options • Search • New Search • Get Count • - Workflow

  24. Menu Options My Projects My Queries My Workflows Approve User Request

  25. Dashboard • Components of Dashboard • Projects

  26. Projects My Projects View Project

  27. View Project Back to Project List

  28. Dashboard • Introduction to Dashboard • Projects • Queries • Recent Queries • My Queries • Shared Queries

  29. Recent Queries Counts Run status Completed Failed View Parameters

  30. View Parameters under Recent Queries Query Parameters

  31. My Queries # of Queries Query Type Edit Query Query Title Execute Query

  32. Shared Queries Edit Query Execute Query

  33. Dashboard • Introduction to Dashboard • Projects • Queries • Workflows

  34. Workflows Workflows

  35. Dashboard • Introduction to Dashboard • Projects • Queries • Workflow • Message Board

  36. Q & A • Please feel free to contact me at any time • Email: bgeorge@wustl.edu

More Related