1 / 7

Batch Analysis Planning

Batch Analysis Planning. Motivation. Run offline processes to enable biomarker qualification, validation, etc. What is Batchmake?. Scripting language for constructing processing pipelines Output to Condor DAG scripts. No processing built-in No statistics/analysis built-in. What is LSTK?.

rania
Download Presentation

Batch Analysis Planning

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Batch Analysis Planning

  2. Motivation • Run offline processes to enable biomarker qualification, validation, etc.

  3. What is Batchmake? • Scripting language for constructing processing pipelines • Output to Condor DAG scripts. • No processing built-in • No statistics/analysis built-in

  4. What is LSTK? • Lesion-Sizing Toolkit • Baseline segmentation algorithms • Test Application will be run using Batchmake on a set of data from Midas (imported from NBIA

  5. What is AVT? • Tools for algorithm validation • Baseline segmentation • Result analysis (using GNU R) • Batch processing? • GUI Only?

  6. Planning/Goals * Demonstrator with LSTK modules run via Batchmake (Semi-Automated) * Apr. 22, 2010 Digital Archiving with MIDAS

More Related