'Blast results' presentation slideshows

Blast2GO presentation @ StatSeq COST workshop

Blast2GO presentation @ StatSeq COST workshop. 21 nd -23 rd April 2013, Helsinki, Finland. Friday 25 th January 2013, Royal Melbourne Hospital. Why Blast2GO. Functional characterization of novel sequence data. Adapted of high throughput needs of biological laboratories.

831 views • 70 slides

Ollie Bridle BSc. Hons., MA., MPhil. oliver.bridle@ouls.ox.ac.uk May 2008

Ollie Bridle BSc. Hons., MA., MPhil. oliver.bridle@ouls.ox.ac.uk May 2008. WISER: Bioinformatics:. sources for research in biology. Outline. Introduction. Information sources in biology and associated problems. What is bioinformatics? DNA databases. Entrez. (+ exercise) Summary. Aims.

545 views • 53 slides

Pairwise Sequence Alignment Exercise 2

Pairwise Sequence Alignment Exercise 2. Motivation.

521 views • 38 slides

Last lecture summary

Last lecture summary. identity vs. similarity homology vs. similarity gap penalty affine gap penalty gap penalty high fewer gaps, if investigating related sequences low more gaps, larger gaps, distantly related sequences. BLOSUM. blocks focuse on substitution patterns only in blocks

449 views • 32 slides

Regulated Unproductive Splicing

390 views • 25 slides

Dot plot

600 views • 24 slides

MICB 405 Bioinformatics Mini-Lab #2 - BLAST

381 views • 21 slides

BIC I, Week 6 lectures

BIC I, Week 6 lectures. Rhys Price Jones and Anne Haake Rochester Institute of Technology rpjavp@rit.edu , arh@it.rit.edu. FASTA & BLAST. Faster than dynamic programming But may miss some alignments Use heuristics to speed up search. Heuristic.

336 views • 19 slides

Analysis of your 16s RNA

Analysis of your 16s RNA. DNA sequencing. Most current sequencing projects use the chain termination method Also known as Sanger sequencing, after its inventor Based on action of DNA polymerase Adds nucleotides to complementary strand Requires template DNA and primer.

279 views • 19 slides

Sequence Alignments

417 views • 17 slides

MaizeGDB: A Next-Generation Maize Database

MaizeGDB: A Next-Generation Maize Database. What Is MaizeGDB?. MaizeGDB is a central repository for public maize information. MaizeGDB incorporates data from various public resources, including GenBank, as well as curated data.

332 views • 16 slides

MaizeGDB: A Next-Generation Maize Database

MaizeGDB: A Next-Generation Maize Database. What Is MaizeGDB?. MaizeGDB is a central repository for public maize information. MaizeGDB incorporates data from various public resources, including GenBank, as well as curated data.

170 views • 16 slides

Functional Annotation of uncharacterized proteins in PDB

Functional Annotation of uncharacterized proteins in PDB. Guided by: Dr Shuchismita Dutta. Process O verview. 3 Approaches :. RCSB Sequence/3D Similarity Literatures 10 Steps Method. One Case Study. Details : PDB ID: 1WX9 [17-89] Accession No P46379 Length: 86

312 views • 13 slides

Evolution Lab

Evolution Lab. Pre Lab Exercise:. 1. Name/Title/ Partners/ Date 2. Observations 3. Hypothesis- cladogram w/explanation 4. Data: Species/Max Score/ E value/ number of nucleotides in sequence First species for each gene Make data table.

264 views • 11 slides

Graphs for workflow

Graphs for workflow. Dots assemblies. NRDB. Psipred. PDB. BlastX. Blast NR PDB. BlastP. MapCandAssembly SeqsToGenome. InterProScan. Genome Workflow. Compile time Include/Exclude. Molecular Weight. Calculate Protein Seq Include:Tbrucei927, Lmajor, Linfantum, Lbraziliensis.

177 views • 8 slides