'Multiple sequence' presentation slideshows

Database search and pairwise alignments

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Computational methods in phylogenetic analysis

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Pairwise and multiple sequence alignments

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Phylogeny Reconstruction

Phylogeny Reconstruction. Maureen E Stolzer 03510/03710 Lecture Carnegie Mellon University March 18, 2008. Modified from www.bioalgorithms.info. Outline. Phylogenetics Evolutionary Tree Reconstruction Distance Based Phylogeny Additive and Ultrametric Matrices Neighbor Joining Algorithm

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3D -COFFEE Mixing Sequences and Structures

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LSM2104 Part II Lectures 3 and 4

LSM2104 Part II Lectures 3 and 4. Tan Tin Wee Dept of Biochemistry NUS. Topics. Derivation of PAM and BLOSUM and Scoring Matrices Basic Introduction to Dynamic Programming Techniques Details of Needleman-Wunsch and Smith-Waterman Algoriths FASTA and BLAST Heuristics

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TCS: A new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree

TCS: A new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction. http://www.tcoffee.org/Packages/Stable/Latest http :// tcoffee.crg.cat / tcs.

570 views • 38 slides

Multiple Sequence Alignment (MSA)

Multiple Sequence Alignment (MSA). Multiple Alignment. Number of sequences >2 Global alignment Seek an alignment that maximizes score. Multiple Alignment.

483 views • 38 slides

Lecture 5: Bioinformatics software

Essential Bioinformatics and Biocomputing ( LSM2104: Section I) Biological Databases and Bioinformatics Software Prof. Chen Yu Zong Tel: 6874-6877 Email: csccyz@nus.edu.sg http://xin.cz3.nus.edu.sg Room 07-24, level 7, SOC1, NUS January 2003. Lecture 5: Bioinformatics software. Outline :

757 views • 35 slides

Lecture 5: Bioinformatics software

Essential Bioinformatics and Biocomputing ( LSM2104: Section I) Biological Databases and Bioinformatics Software Prof. Chen Yu Zong Tel: 6874-6877 Email: csccyz@nus.edu.sg http://xin.cz3.nus.edu.sg Room 07-24, level 7, SOC1, NUS January 2003. Lecture 5: Bioinformatics software. Outline :

648 views • 35 slides

Lecture 7

Bioinformatics. Lecture 7. Types of databases. Principles of organizations and functioning. Sequence formats. Conversion of one sequence format to another. Database search. FASTA, BLAST. . Protein and DNA/RNA Databases.

561 views • 31 slides

Trees, Stars, and Multiple Biological Sequence Alignment

Trees, Stars, and Multiple Biological Sequence Alignment. Jesse Wolfgang CSE 497 February 19, 2004. Importance?. Molecular evolution (Dayhoff). RNA folding (Trifonov, Bolshoi). Gene regulation (Galas et al.). Protein structure-function relationships (Wu, Kabat). Introduction.

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Comparative genomics Joachim Bargsten February 2012

Comparative genomics Joachim Bargsten February 2012. Comparative genomics The study of the relationship of genome structure and function across different biological species or strains . Why should we do this? How are we going to do this?. Study evolution. Resolve Differences

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An Extension of the Burrows Wheeler Transform and Applications to Sequence Comparison and Data Compression

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Amino Acid Sequences in V3 Loop Conformation

Amino Acid Sequences in V3 Loop Conformation . Alex Cardenas, Bobby Arnold and Zeb Russo Loyola Marymount University Department of Biology BIO 398 11/02/11. Outline . CD4 T cell count is a trait in developing AIDs ( >200 safe, <200 AIDs).

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Towards a Knowledge Society

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