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Per Kraulis, CV

Experienced Chemical Engineer and Systems Architect skilled in software system administration and setup of Laboratory Information Management Systems (LIMS). Proficient in relational database systems, programming languages, and analysis pipeline workflows.

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Per Kraulis, CV

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  1. Per Kraulis, CV • Chemical Engineer, KTH • Structural Biology • Protein NMR & 3D analysis • Ph.D. Uppsala Univ • Postdoc Cambridge Univ • Karolinska Inst • Bioinformatics • Pharmacia • Sthlm Bioinfo Center • Biovitrum • Tartu University • SGC

  2. More about me... • http://se.linkedin.com/in/perkraulis • http://www.citeulike.org/user/pekrau • http://delicious.com/pekrau • http://www.avatar.se/

  3. Systems Architect(Scientific programmer/Systems developer) • Relational database systems • MySQL, Oracle • Other database systems • Gdbm, XML, OODBMS • Software • MolScript • ANSIG (protein NMR) • Programming • Python • JavaScript (Ajax) • C, C++, Simula, Pascal, Eiffel, Fortran...

  4. Task: Software system admin • Setup of common stuff • On russola & other “local” servers • Tools (executables) • Reference databases (Human genome, etc) • Documentation • (Help with) sysadmin • Disk police • Queues?

  5. Task: LIMS setup • Geospiza LIMS for Genomics (?) • Configuration • Integration with analysis • Policy for datasets • Persistent, coherent identifier scheme • Storage and backup • ELN issue: Contur, Wiki, Google Wave,...?

  6. Task: Analysis Pipeline • Standard analysis for Service-for-fee • Set up analysis modules • Set up self-tests • Visualization tools • Explore datasets • Identify strange problems

  7. Task: Workflow system • Current trend in e-Science: Taverna, Galaxy,... • Flownode (under development) • Web-integrated (fully, not just client-only) • Cloud-computing (Grid) enabled • Human interaction (via browser) • Programmatic interface • Web Services • REST architecture • Implement standard analysis modules

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