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From Gene to Protein: Part 2 – Translation. Making the Polypeptide Chapter 17C. “The human mind treats a new idea the same way the body treats a strange protein; it rejects it.” ~ P. B. Medawar. Nerdy Quote of the Day!. What is translation?. mRNA Polypeptide
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From Gene to Protein:Part 2 – Translation Making the Polypeptide Chapter 17C
“The human mind treats a new idea the same way the body treats a strange protein; it rejects it.”~ P. B. Medawar Nerdy Quote of the Day!
What is translation? • mRNA Polypeptide • Occurs in cytoplasm on ribosome
Ribosomal Structure • Large and small subunit – join to create active ribosome • Made in nucleolus • Made of rRNA and protein • 3 binding sites for tRNA • A-site: Aminoacyl-tRNA site • Holds tRNA carrying next aa to be added to chain • P-site: Peptidyl-tRNA site • Holds tRNA carrying growing polypeptide chain • E-site: Exit site • Discharged tRNAs leave ribosome
Ribosomal Function • Synthesize proteins • Add amino acids together • Peptide bonds – carboxyl and amino ends
tRNA Structure • Transfer RNA • Used repeatedly (about 45 different versions) • About 80 nucleotides long • Complement to mRNA (NOT identical!) • Folds on itself to form 3D structure using hydrogen attractions • “L” shaped • Anticodon end vs. aa End
tRNA Function • Picks up designated aa and brings it to ribosome • Drops off, leaves, gets another • Interpreter of mRNA by codons
Aminoacyl tRNA Synthetases • Enzyme that joins aa to tRNA • 20 different enzymes • 1 for each aa • Hydrolysis of ATP provides energy
Steps to Translation • Initiation • Binding of ribosome, AUG • Elongation • Addition of more aa to polypeptide chains • Termination • Stop codons, release factors
TRANSLATION: INITIATION • Small subunit + mRNA + special initiator tRNA • mRNA initiation codon AUG starts translation • Codes for Met and attaches to AUG • Large subunit can bind • Completes Translation Initiation Complex • **Various initiation factors are needed • **GTP required • Initiator tRNA moves to P-site • Leaves A-site open for next tRNA + aa
INITIATION Prokaryotes vs. Eukaryotes • In Prokaryotes • rRNA of small subunit base-pairs with mRNA leader • In Eukaryotes • 5’ cap tells small subunit to attach at 5’ end
TRANSLATION: ELONGATION • Codon Recognition • mRNA in A site hydrogen attracts to anticodon of incoming tRNA+aa • Elongation factor helps tRNA into A-site • 2 GTP needed • Peptide Bond Formation • rRNA of lg. subunit acts as ribozyme • Peptide bond • Polypeptide separates from tRNA in P-site
ELONGATION – Cont’d • Translocation • Moves tRNA A-site P-site • tRNA/mRNA still hydrogen attracted • Next codon in A-site • P-site E-site, leaves ribosome • 1 GTP needed for release
TRANSLATION: TERMINATION • Stop codon • UAA, UAG, or UGA • Do not code for aa • Release factor binds to stop codon in A-site • Adds H2O to chain • Hydrolysis of polypeptide from tRNA in P-site • Subunits dissemble and release factor leaves
Post-Translational Modifications • Additions of sugars, lipids, phosphates, other • Chaperone protein • Help with folding 3º • Take off 1+ aa from N-terminus • Cleave by enzyme of 2+ pieces • Cut and are stuck together by disulfide bonds • 4º structure
Polyribosomes • 1 mRNA gives rise to MANY polypeptide chains very quickly • Ribosomes line up one after another, making/using the same polypeptide