1 / 12

interactions with other organisms

interactions with other organisms. Amelia Ireland and Jane Lomax. The Ontology. Lack of Counterpart Terms. The ‘Non-host’ Problem. The ‘Non-host’ Problem II. Solutions. Remove ‘non-host’ designation Add generic processes with the wording ‘other organism’

tingley
Download Presentation

interactions with other organisms

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. interactions with other organisms Amelia Ireland and Jane Lomax

  2. The Ontology

  3. Lack of Counterpart Terms

  4. The ‘Non-host’ Problem

  5. The ‘Non-host’ Problem II

  6. Solutions • Remove ‘non-host’ designation • Add generic processes with the wording ‘other organism’ • Add existing ‘host’ and new ‘symbiont’ terms as children • Append terms with ‘during symbiotic interaction’ to clarify

  7. Solutions • E.g. acquisition of nutrients from host • acquisition of nutrients from other organism during symbiotic interaction • acquisition of nutrients from host • acquisition of nutrients from symbiont

  8. Solutions: before

  9. Problems with Viruses

  10. Solutions: viruses • Generalize virus terms to apply to any organism • Processes with specific viral variants can be renamed • Reassess terms and annotations to see if they refer to host or virus processes; add new terms as required • Rehome terms under ‘interaction with other organisms’

  11. Solutions • cell communication / signalling • cell adhesion / fusion (e.g. membrane fusion) • cell death • response to biotic stimuli from other organisms • behaviours involving other organisms, e.g. mating • entry into / engulfing / incorporating another organism • movement within another organism • exit from another organism • phagocytosis • nodulation • pollination

  12. Questions • Is ‘response to other organism’ equivalent to ‘interaction with other organism’? • Is ‘multi-organism biological process’ equivalent to ‘interaction with other organism’?

More Related