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Current situation Identify packages needed Applications (eg. Blast) Tools (eg., Bio*)

Current situation Identify packages needed Applications (eg. Blast) Tools (eg., Bio*) Suits (eg. EMBOSS) Download “open-source” packages Install them Dependency issues Consistency (paths) Documents Interface (web,X) & Integration (piping) “Red Hat” for bioinformatics ?.

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Current situation Identify packages needed Applications (eg. Blast) Tools (eg., Bio*)

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  1. Current situation • Identify packages needed Applications (eg. Blast) Tools (eg., Bio*) Suits (eg. EMBOSS) • Download “open-source” packages • Install them Dependency issues Consistency (paths) Documents • Interface (web,X) & Integration (piping) “Red Hat” for bioinformatics ?

  2. Biolinux Concept • Open-source • Set of “essential” bioinformatics tools released in rpm format • Initial rpms made for blast, alignment, phylogenetics, .. • Interface and Integration (PISE/HTML::MASON) • Documentation • Demo database(s) • Manuals/Wizards

  3. Released soon http://biolinux.org Helping hands: info@biolinux.org wim@bioinformatrix.com

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