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HIV Vaccine Database and Web Works

HIV Vaccine Database and Web Works. UCSC Bid. HIV Vaccine Database and Web Works. UCSC Status Report. UCSC Genome Browser Team. genome.ucsc.edu one of the top 3 bioinformatics sites ~1 million lines of code over 2.5 millions hits per week. GSID Project Team

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HIV Vaccine Database and Web Works

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  1. HIV Vaccine Database and Web Works UCSC Bid

  2. HIV Vaccine Database and Web Works UCSC Status Report

  3. UCSC Genome Browser Team • genome.ucsc.edu • one of the top 3 bioinformatics sites • ~1 million lines of code • over 2.5 millions hits per week • GSID Project Team Jim Kent (lead, The Bioinformatitian) - the man who saved the Public Genome Project Fan Hsu (engineer, coordinator) Galt Barber (engineer) Bob Kuhn (QA) Erich Weiler (system admin)

  4. Project Overview • Relational database encompassing all significant trial data • Web works involving 3 primary views for accessing data Subject View Table View Sequence View

  5. Subject View (proposed)

  6. Subject View (delivered)

  7. Table View (proposed)

  8. Table View (delivered)

  9. Table View (delivered)

  10. Sequence View (proposed)

  11. Sequence View (in progress)

  12. Select Subjects (delivered)

  13. Milestone 0 • Signing Agreement between GSID and UCSC • Done. (11/2006) Whew!

  14. Milestone 1 • VAX004 sequence and clinical data imported into MySQL database • Prototype of homepage developed • Subscription and login pages implemented with mock credit cards • Subject View finalized • Done. (2/10/07)

  15. Milestone 1b • System maintenance* • Hardware spec* • Linux system install & configuration* • UCSC deliverables install/configuration* • UCSC QA • Done. (2/10/07) *Under separate contract to Bioinformatics Professionals

  16. Milestone 2 • Table View finalized and implemented • Real credit cards taken in subscription • Prototype Sequence View available • Done. (5/11/07) • also added Select Subjects

  17. Milestone 3 • Sequence View finalized • Home page finalized • Documentation finalized • Database available for test & launch • ETA 8/15/07

  18. First Year Status Summary • Milestone 0 - contract • Milestone 1 & 1b - Subject View • Milestone 2 - Table View • Security/Registration/Payment • Select Subjects • Milestone 3 (8/15/07) - Sequence View

  19. Thank You

  20. Demo

  21. Security/Signup/Payment(delivered)

  22. 2nd and 3rd Years • 2nd Year • VAX003 data • alignment tools • proteomics tools • 3rd Year • gp160 data • additional alignment tools • data from Keith Crandall

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