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Exploring Rice Phenotypes Using Gramene

A Comparative Mapping Resource. GRAMENE. Exploring Rice Phenotypes Using Gramene. What is Gramene?. Comparative mapping resource for cereals Rice genome browser Genetic and physical maps for rice and other cereals Rice mutant phenotypes, QTL and proteins Literature Ontology.

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Exploring Rice Phenotypes Using Gramene

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  1. A Comparative Mapping Resource GRAMENE Exploring Rice Phenotypes Using Gramene

  2. What is Gramene? • Comparative mapping resource for cereals • Rice genome browser • Genetic and physical maps for rice and other cereals • Rice mutant phenotypes, QTL and proteins • Literature • Ontology http://www.gramene.org

  3. Gramene Home Page http://www.gramene.org

  4. Genome Browser BLAST CMap Proteins Mutants QTL Ontology Literature Markers Germplasm Environment Diversity Gramene Modules http://www.gramene.org

  5. Rice blast resistance gene Pi-ta • Bryan et al. (2000) Plant Cell 12:2003-2045 • Mediates gene-for-gene resistance against strains of the fungus Magnaporthe grisea that express avirulent alleles of AVR-Pita • 928-aa cytoplasmic receptor with centrally localized nucleotide binding site (NBS) • Mapped to centromeric region of rice chromosome 12 http://www.gramene.org

  6. Are there any putative homologs for Pi-ta in the rice genome?

  7. Gramene Literature Page Q9AY26 http://www.gramene.org

  8. Gramene Protein Page http://www.gramene.org

  9. http://www.gramene.org

  10. Gramene Protein Page http://www.gramene.org

  11. Gramene BLAST Search http://www.gramene.org

  12. http://www.gramene.org

  13. Ensembl Protein Report http://www.gramene.org

  14. Ensembl Gene Report AC135644 http://www.gramene.org

  15. Ensembl Genome Browser http://www.gramene.org

  16. Gramene QTL Database • 7,738 quantitative trait loci • Rice, maize, barley, oat, pearl millet, foxtail millet, wild rice (Zizania) • Literature curated from 1994-Aug. 2004 Biotic stress http://www.gramene.org

  17. Trait Categories Abiotic stress Anatomy Biochemical Biotic stress Development Quality Sterility or fertility Vigor QTL Trait Browser Biotic stress http://www.gramene.org

  18. QTL Text Search blast*resistance http://www.gramene.org

  19. Blast disease resistance (BLRS) • QTL Data Fields • Species name • Trait name • Trait synonyms • Linkage group • Trait category • Trait symbol • Published symbol • QTL Accession ID http://www.gramene.org

  20. CMap Comparative Map Viewer http://www.gramene.org

  21. Xa21 Xa23 Pi18 BLRS Pilm2 AC135644 Pi1 http://www.gramene.org

  22. Millet in Gramene http://www.gramene.org

  23. Millet QTL http://www.gramene.org

  24. Susan McCouch Pankaj Jaiswal Junjian Ni Molly Fogleman Noel Yap Lincoln Stein Doreen Ware Ken Clark Kiran Ratnapu Liya Ren Wei Zhao Steve Schmidt Shuly Avraham The Gramene Team http://www.gramene.org

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