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Exploring Rice Phenotypes Using Gramene Molly Fogleman – Outreach coordinator

This resource explores the rice phenotype and the rice blast resistance gene Pi-ta, which mediates gene-for-gene resistance against the fungus Magnaporthe grisea. It provides information on putative homologs for Pi-ta in the rice genome, mapping data, protein reports, and QTL databases related to blast disease resistance.

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Exploring Rice Phenotypes Using Gramene Molly Fogleman – Outreach coordinator

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  1. A Comparative Mapping Resource GRAMENE Exploring Rice Phenotypes Using Gramene Molly Fogleman – Outreach coordinator

  2. Rice blast resistance gene Pi-ta • Bryan et al. (2000) Plant Cell 12:2033-2046 • Mediates gene-for-gene resistance against strains of the fungus Magnaporthe grisea that express avirulent alleles of AVR-Pita • 928-aa cytoplasmic receptor with centrally localized nucleotide binding site (NBS) • Mapped to centromeric region of rice chromosome 12 http://www.gramene.org

  3. Are there any putative homologs for Pi-ta in the rice genome that correlate with regions of known resistance?

  4. Gramene Literature Page http://www.gramene.org

  5. Gramene Protein Page http://www.gramene.org

  6. http://www.gramene.org

  7. Gramene Protein Page http://www.gramene.org

  8. Gramene BLAST Search http://www.gramene.org

  9. http://www.gramene.org

  10. Tigr_gene Protein Report http://www.gramene.org

  11. Tigr_gene Gene Report AC135644 http://www.gramene.org

  12. Ensembl Genome Browser http://www.gramene.org

  13. Gramene QTL Database • ~8,000 quantitative trait loci • Rice, maize, barley, oat, pearl millet, foxtail millet, wild rice (Zizania) • Literature curated from 1994-Aug. 2004 Biotic stress http://www.gramene.org

  14. QTL Trait Browser Biotic stress http://www.gramene.org

  15. QTL Text Search blast*resistance http://www.gramene.org

  16. Blast disease resistance (BLRS) http://www.gramene.org

  17. CMap Comparative Map Viewer BLRS http://www.gramene.org

  18. Xa21 Xa23 AC135644 BLRS Pi18 Pilm2 Pi1 http://www.gramene.org

  19. Region of disease resistance? • Possible cluster of disease resistance genes and QTL at the end of rice chromosome 11 • May or may not be the same gene http://www.gramene.org

  20. Susan McCouch Pankaj Jaiswal Junjian Ni Molly Fogleman Noel Yap Lincoln Stein Doreen Ware Chengzhi Liang Ken Clark Kiran Ratnapu Liya Ren Wei Zhao Steve Schmidt Shuly Avraham Will Spooner The Gramene Team http://www.gramene.org

  21. Gramene PAG Workshops and Posters • Workshops: • W183 Intl. Grass Genome Initiative - Genomes And Phenomes, What Do Rice, Maize, Millet And Wheat Have In Common? Monday, January 17, 4:40-6:50pm • Development and Implemention of Ontologies in the Database: An NSF sponsored Training Workshop Monday, January 17, 12:50-3:00pm • Posters: • P242 An Update On Gramene QTL Data Module • P254 Gramene Comparative Genome Views: How Can Gramene Leverage Rice For The Other Grasses? • P816 Gramene Diversity Module: Sharing The Data Behind Germplasm, QTL, And Breeding Studies • P870 Gramene: A Comparative Mapping Resource For The Grasses http://www.gramene.org

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