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Rubber Hits the Road: How RDF benefits NEMO

Rubber Hits the Road: How RDF benefits NEMO. Paea LePendu Stanford Center for Biomedical Informatics Research National Center for Biomedical Ontology (NCBO) Stanford University February 26, 2010. Linked Open Data (http:// linkeddata.org /). NIF. BioPortal. NEMO.

yoshio-castaneda
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Rubber Hits the Road: How RDF benefits NEMO

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  1. Rubber Hits the Road:How RDF benefits NEMO PaeaLePendu Stanford Center for Biomedical Informatics Research National Center for Biomedical Ontology (NCBO) Stanford University February 26, 2010 NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  2. Linked Open Data(http://linkeddata.org/) NIF BioPortal NEMO NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  3. Web of Knowledge(http://www.iskouk.org/presentations/miles_web_and_skos_200807.pdf) NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  4. Web of Knowledge(http://www.iskouk.org/presentations/miles_web_and_skos_200807.pdf) NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  5. Who is Eric Miller?Resource Description Framework (RDF)(http://en.wikipedia.org/wiki/Resource_Description_Framework) NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  6. Annotation at NCBO • Resource Index • PubMed, PubChem, ClinicalTrials, Gene Expression Omnibus, DrugBank, etc. • Data is a publication or article • Resource is a supplier of data • Index associates data to ontology terms • 20 resources (going on 100) • Over 5 BILLION annotations! NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  7. Annotation • Tagged Datasets • Search & Retrieval • Mining: • Co-occurrences • Cross-correlations • Frequent items • Tag clouds • Minimal inference P100 ROCC LOCC N100 NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  8. Deep Annotation • Tagged records within datasets • Rich semantics • Detailed queries (SPARQL) • Aggregations • Fine-grained analysis • NEMO is novel! NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  9. NEMO Annotation Task Force(http://nemo.nic.uoregon.edu/wiki/Data_Annotation) • Key Personnel: • Haishan Liu, Bob Frank, Jason Sydes • Gwen Frishkoff & Dejing Dou • Goals (3 phases): • Prototyping Annotations • Finessing Annotations and Ontology Mappings • Databasing the Annotations (RDF) NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

  10. Thank you. • Questions? NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

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