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The Pensoft Journal System and XML-based workflow

ViBRANT. Virtual Biodversity. The Pensoft Journal System and XML-based workflow. Lyubomir Penev Life and Literature Conference, Chicago 2011.

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The Pensoft Journal System and XML-based workflow

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  1. ViBRANT Virtual Biodversity The Pensoft Journal System and XML-based workflow Lyubomir Penev Life and Literature Conference, Chicago 2011

  2. Launched in 1992; more than 700 books published, 85 % in English, mostly in biodiversity science and natural history;global scope of authors and partners Operates from two offices, in Sofia and Moscow, 15 employes The flagship open access journal ZooKeys launched in July 2008; unill now, ZooKeys published 150 issues and more than 18,000 pages; currently published 2-3 times per week; 120 % grow in 2011 in comparison to 2010 Content and metadata automatically disseminated to BHL Citebank, Mendeley, EOL, Species-ID, Plazi, Key Central, GBIF, Wkispecies, Wikimedia Commons, etc. CrossRefmember, ISI andScopuscovered,indexed in Zoological Record, DOAJ, CABI Abstracts, Google Scholar; archiving inPubMedCentral TRIADA – Pensoft’s digital publishing platform launched in November 2010 Quick facts about Pensoft

  3. Since July 2010 – all Pensoft journals published through an XML-based editorial worlkflow using the Pensoft Mark Up Tool (PMT) for semantic mark up Tools for automated extraction and dissemination of published content based on TaxPub (extension of NLM DTD) Tools for web crawiling and linking of published content to external resources (PensoftTaxon Profile, PTP) Data publishingworkflows integrated with Dryad Data Repository and GBIF Innovations

  4. Why XML? Atomization of content Plazi

  5. Semantic enhancements to published texts

  6. Semantic enhancements to published texts

  7. The open access is the only publishing model that allows true and unlimited possibility for innovative publishing! Readers are in love with open access The same readers, when becoming authors,are not that enthusiastic to pay for open access (in many cases) Sociological barriers: the majority of authors are not willing to change their writing habits and are still not aware about the tremendous advantages of the Web 2.0 technologies Most small publishers (and some bigger ones) do not understand the importance of semantic tagging or just cannot afford it Cost efficiency – a dramatic gap between production costs and what authors are willing to pay The lessons learned

  8. The Future (plans for 2012) An automated, “press-a-button” submission of manuscripts, from Scratchpadsand authors’ databases An automated, “press-a-button” submission of data paper manuscripts, through XML, from the GBIF metadata catalogue – data publishing Launching of an open-access, “next generation”, Biodiversity Data Journal A new online collaborative editorial platform based on upfront markup New article-level metrics; Pensoft Reference Tool (PRT) for handling literature references

  9. Collaboration is needed in: Development and implementation of any kind of alternative article-level and journal-level metrics Citation tracking mechanisms and citation data exchange with other platforms Atomized content dissemination/exchange/mashups Markup services

  10. On the BHL’s mission and future BHL should become a true archive of both historical and recently published biodiversity literature CiteBankwas launched as a repository for bibliographic metadata linked to an online version of an article – really important mission to pursue! DREAM: Close collaboration between CiteBank, Mendeley,ViBRANT’s Bibliography of Life, libraries and publishers for article-level metadata exchange, de-duplication, and reconciliation

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