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Southern California Bioinformatics Summer Institute

Southern California Bioinformatics Summer Institute. Wendie Johnston, Beverly Krilowicz, Jamil Momand, Sandra Sharp, Nancy Warter-Perez. Today. Introduction to SoCalBSI Momand, Warter-Perez, Johnston, Sharp Pre-program evaluation-Momand Andrew Clark Campus tour-Ronnie Cheng

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Southern California Bioinformatics Summer Institute

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  1. Southern California Bioinformatics Summer Institute Wendie Johnston, Beverly Krilowicz, Jamil Momand, Sandra Sharp, Nancy Warter-Perez

  2. Today • Introduction to SoCalBSI • Momand, Warter-Perez, Johnston, Sharp • Pre-program evaluation-Momand • Andrew Clark • Campus tour-Ronnie Cheng • Golden Eagle cards, NIS accounts • Lunch • Molecular biology review/Computer programming review

  3. SoCalBSI Mission To identify and educate college students for successful careers in bioinformatics Part of NSF-NIH BBSI Project Grant number EEC-0609454

  4. 1) Software programs 2) Programming skills   3) Career counseling 4) Research experience 5) Professional development 6) Professional relationships Goals of SoCalBSI

  5. Molecular • Life Science • Central Dogma • Molecular Basis of Disease • DNA Primary Sequence • Protein Primary, Secondary, Tertiary Structure • Molecular Evolution • Signal Transduction • Core Bioinformatics • Literature Searching • NCBI Model • Scoring Matrices • Dynamic Programming • Global vs. Local Sequence Alignment • Multiple Sequence Alignment • Molecular Life Science Databases • Protein Modeling • Microarrays • Proteomics • Statistics • Probability Theory • Hidden Markov Chain • Bayes’ Theory • Expect Value • Rule of Counting • Ethics • Privacy • Security • Human Genome • Computer Science • Structured Programming • Data Structures • Algorithms • Complexity Analysis • Software Engineering

  6. -Student Recruitment -WebPage Dev/Maint -Speaker Travel -Scheduling -Student Housing -Student Stipends Achievement of Program Goals Ronnie Cheng S. Sharp Research Training N. Warter-Perez Didactic Training W. Johnston Professional Development B. Krilowicz Project Evaluation Program Coordinator Special Topics Instructors: -R. Johnston -Research Seminar Speakers: -A. Levine -P. Sternberg Coordination of Research Mentors: BioDiscovery CSULA Caltech City of Hope HMRI UCLA USC Allergan House Ear Institute JPL J. Momand S. Sharp

  7. Who are you? • 7 Males, 3 Females • 2 graduate students and 8 undergraduates • 4 from CA, 6 from outside CA

  8. Open hours • Lectures/Workshops 9-12, 1-4 • Computer Workstations in Open Lab open from 8 am – 8 pm M-F • Eating on campus-Yes • Campus Escort Service (323) 343-3700 • WiFi hot spots in dormitories, library, eateries.

  9. Course logistics • Course Website (SoCalBSI) • Bioinformatics manual on-line • Power point presentations • In-class workshops • References

  10. Questions?

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