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Southern California Bioinformatics Summer Institute

Southern California Bioinformatics Summer Institute. Wendie Johnston, Beverly Krilowicz, Jamil Momand, Sandra Sharp, Nancy Warter-Perez. SoCalBSI Mission. To identify and educate college students for successful careers in bioinformatics. Part of NSF-NIH BBSI Project

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Southern California Bioinformatics Summer Institute

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  1. Southern California Bioinformatics Summer Institute Wendie Johnston, Beverly Krilowicz, Jamil Momand, Sandra Sharp, Nancy Warter-Perez

  2. SoCalBSI Mission To identify and educate college students for successful careers in bioinformatics Part of NSF-NIH BBSI Project Grant number EEC-0609454

  3. 1) Software programs 2) Programming skills   3) Ethics   4) Career counseling 5) Research experience 6) Professional development 7) Professional relationships Goals of SoCalBSI

  4. Molecular • Life Science • Central Dogma • Molecular Basis of Disease • DNA Primary Sequence • Protein Primary, Secondary, Tertiary Structure • Molecular Evolution • Signal Transduction • Core Bioinformatics • Literature Searching • NCBI Model • Scoring Matrices • Dynamic Programming • Global vs. Local Sequence Alignment • Multiple Sequence Alignment • Molecular Life Science Databases • Protein Modeling • Microarrays • Proteomics • Statistics • Probability Theory • Hidden Markov Chain • Bayes’ Theory • Expect Value • Rule of Counting • Ethics • Privacy • Security • Human Genome • Computer Science • Structured Programming • Data Structures • Algorithms • Complexity Analysis • Software Engineering

  5. -Student Recruitment -WebPage Development -Speaker Travel -Scheduling -Student Housing Achievement of Program Goals Ronnie Cheng S. Sharp Research Training N. Warter-Perez Didactic Training W. Johnston Professional Development B. Krilowicz Project Evaluation Program Coordinator Special Topics Instructors: -K. Venallis - S. Heubach -F. Zhou -R. Johnston -Research Seminar Speakers: -J. Sinsheimer -Eleastas -TBA Coordination of Research Mentors: Caltech City of Hope HMRI UCLA USC Mannkind Allergan House Ear Nose and Tht JPL CSULA J. Momand S. Sharp

  6. Who are you? • 8 Males, 10 Females • 8 graduate students and 10 undergraduates • 12 from CA, 6 from outside CA • Majors in Mol Bio& Micro, Bio, Bioinf, Mol Bio, Chem, CS, Bio&Math, Biochem, Bioeng, Biotech

  7. Open hours • Computer Workstations in Open Lab open from 8 am – 8 pm M-F • Eating on campus-Yes • Campus Escort Service (323) 343-3700 • WiFi hot spots in the Student Housing area • Lectures/Workshops

  8. Course logistics • Course Website (SoCalBSI) • Power point presentations • In-class Workshops • References

  9. Questions?

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