1 / 16

FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013

FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013. History. 1999: C reation of original FishNet Network. Z39.50 protocol for sharing data. Search via Species Analyst (distributed query model). 2005: FishNet 2 created. Transition to DiGIR Protocol.

candy
Download Presentation

FishNet 2 Collaborative Georeferencing Workshop Lawrence, KS 10-11, Jan 2013

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. FishNet 2 Collaborative Georeferencing WorkshopLawrence, KS 10-11, Jan 2013

  2. History 1999: Creation of original FishNet Network Z39.50 protocol for sharing data Search via Species Analyst (distributed query model) 2005: FishNet 2 created Transition to DiGIR Protocol Search via DiGIR Portal (distributed query model) 2010: FishNet 2 (centralized query model) Harvesting of DiGIR, DwCA, IPT, Static Spreadsheets Search via FishNet 2 Portal (centralized query model) 2012-2016:Portal &data expansion and enhancement

  3. Global network of fish collections 48 data providers 3.2 million lots 30+ million specimens 57% georeferenced

  4. Generalizing FishNet 2: The Biological Object Search Service (BOSS)

  5. Full Text Searches Common NamesSynonyms Institutional Temporal Geographic

  6. Enabling Spatial Queries

  7. Search Results ProviderSummary Occurrence Records GeographicSummary TaxonSummary

  8. Downloading & Visualizing Results

  9. Search API • Characteristics • “REST” like style • Output in CSV or Tab • API Key to track usage • Services • Taxon • Provider • Occurrence • Occurrence Counts • Allows integration with research workflows Percina aurora www.fishnet2.net/api/v1/occurrence/?api=myapikey&t=percina aurora

  10. Interoperability: RVertNet > library(rvertnet) > f1=vertoccurrence(t="Hypophthalmichthys molitrix",grp="fish") > f2=subset(f1,Latitude !=0 & Longitude != 0) > world = map_data("world") > ggplot(world, aes(long, lat)) + geom_polygon(aes(group = group), fill = "white",color = "gray40", size = .2) + geom_jitter(data = f2, aes(Longitude, Latitude), alpha=0.6, size = 2.5, color = "red") +opts(title = "Hypophthalmichthys molitrix (Silver Carp)") • http://github.com/vijaybarve/rvertnet

  11. Reporting

  12. ReportingDetails

  13. by the Numbers Number of Records Number of Queries or Visitors

  14. Current Project Goals: To expand the number of records within FishNet to approximately 4 million lots representing over 30 million specimens To georeference all "georeferencable" records lacking geographic coordinates To repatriate results to source data providers

  15. Georeferencing Collaborators

  16. “Preliminary” Assignments 2 out of 4 million records in need of georeferencing~290,000 locality records

More Related