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AMEN an exploration platform for high-throughput data

AMEN an exploration platform for high-throughput data. Frédéric Chalmel CR2, Primig’s lab, GERHM - INSERM U625 Université de Rennes 1, France. A nnotation M apping E xpression and N etwork suite of tools. http://sourceforge.net/projects/amen & Chalmel et al. 2008. Expression level. High.

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AMEN an exploration platform for high-throughput data

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  1. AMEN an exploration platformfor high-throughput data Frédéric Chalmel CR2, Primig’s lab, GERHM - INSERM U625 Université de Rennes 1, France Annotation Mapping Expression and Network suite of tools http://sourceforge.net/projects/amen & Chalmel et al. 2008

  2. Expression level High Low Annotation Mapping Expression and Network suite of tools Transcriptomic Raw data Statistical filtration Clustering Spg Spc Spt Spg Spc Spt Normalization & Quality control mitotic meiotic post-meiotic

  3. post-meiotic mitotic meiotic Annotation Mapping Expression and Network suite of tools Protein Annotation: Gene Ontology Clusters of co-expression Spg Spc Spt mitotic meiotic post-meiotic

  4. mitotic meiotic post-meiotic X Annotation Mapping Expression and Network suite of tools Clusters of co-expression Chromosomal localisation Spg Spc Spt No meiotic genes on X Meiotic SexChromosomeInactivation mitotic meiotic post-meiotic

  5. mitotic meiotic post-meiotic Annotation Mapping Expression and Network suite of tools Prot-Prot interaction & Prot-DNA regulation data Clusters of co-expression Spg Spc Spt mitotic meiotic post-meiotic

  6. Annotation Mapping Expression and Network suite of tools Meiotic and/or post-meiotic co-expressed genes coding for nuclear proteins meiotic post-meiotic Many more modules exist for analysis. Enjoy AMEN and feel free to contact me for assistance!

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