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The Sarcoma Data Portal: Making High Content Sarcoma Datasets Available For All Users

The Sarcoma Data Portal: Making High Content Sarcoma Datasets Available For All Users. Jonathan Keats, PhD Translation Genomics Research Institute. Outline. Some examples of other systems Outline of the initial concepts for the Sarcoma Portal. Myeloma Cell Line Portal - Query.

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The Sarcoma Data Portal: Making High Content Sarcoma Datasets Available For All Users

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  1. The Sarcoma Data Portal: Making High Content Sarcoma Datasets Available For All Users Jonathan Keats, PhD Translation Genomics Research Institute

  2. Outline • Some examples of other systems • Outline of the initial concepts for the Sarcoma Portal

  3. Myeloma Cell Line Portal - Query This project includes matched CGH, exome sequencing and RNA sequencing

  4. Myeloma Cell Line Portal - Mutations

  5. Myeloma Cell Line Portal - Expression

  6. Multiple Myeloma Genomics Portal This supports a diverse collection of multiple datasets on multiple platforms

  7. Multiple Myeloma Researcher Gateway

  8. Sarcoma Portal • Initial phase to focus on existing gene expression profiling datasets from large (>20) patient studies. • Preference for studies with overall survival or progression free survival • The central design philosophy is to provide users with an easy way to interrogate datasets

  9. Proposed General Layout

  10. Kaplan-Meier Generation • Single Gene or Multiple Gene Analysis • Subset or Group Analysis • Multiple plot formats • Barplots (individual sample) • Box plots or dot plots (groups) • Histograms (dataset) • Kaplan-Meier (between groups) • Publication quality graphics • Experienced user recommendations

  11. Suggestions are Welcome • jkeats@tgen.org

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