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Profiles Research Networking Software Users Group Meeting profilestalyst.harvard

Profiles Research Networking Software Users Group Meeting http://profiles.catalyst.harvard.edu. July 19, 2013. Agenda. Welcome to New Members Upcoming Events Updates Identifying Translational Science. Profiles Users Group Members. UCSF Fred Hutchinson CRC Oregon Health Sci U

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Profiles Research Networking Software Users Group Meeting profilestalyst.harvard

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  1. Profiles Research Networking SoftwareUsers Group Meetinghttp://profiles.catalyst.harvard.edu July 19, 2013

  2. Agenda • Welcome to New Members • Upcoming Events • Updates • Identifying Translational Science

  3. Profiles Users Group Members UCSF Fred Hutchinson CRC Oregon Health Sci U Lawrence Berkeley UC Davis (CBST) Touro University U Southern California UCLA UC San Diego Charles Drew U Hawaii Arizona State Montana State U Colorado Denver U Nebraska-Lincoln UW Madison UW-Milwaukee U Illinois U Chicago Baylor College Med UT Southwestern UT Houston Midwestern State Univ Jackson State (RTRN) Ohio State Cincinnati Children’s Case Western U Kentucky Vanderbilt Stem Cell U Arkansas Little Rock U Alabama Birmingham Tulane University Harvard Univ Minnesota Dartmouth Univ Mass Boston Univ Tufts Univ Boston VA Rensselaer Univ Connecticut Univ Rochester NYU Med Ctr Long Island University Stony Brook University Mount Sinai Sch of Med New Jersey Med Sch MedMeme Thomas Jefferson UPenn Johns Hopkins USUHS-CNRM NIH George Wash U Penn State Childrens Nat Med Ctr Duke Cancer Institute Wake Forest Leadership in Med HSSC Georgia Tech Piedmont Healthcare Emory University Symplectic Limited (UK) University of Dundee (UK) McGill University (Canada) Finders University (Australia) University of Cambridge (UK) Erasmus University (Brussels) Makerere University (Uganda) Elysium, Geneva (Switzerland) University of Calgary (Canada) University of Leuven (Belgium) South-Valley University (Egypt) University of Salzburg (Austria) Beijing Normal University (China) University of the South Pacific (Fiji) Velammal Engineering College (India) University of Limpopo (South Africa) Nati Sci Lib, Chinese Acad of Sci (China) Clinical & Biomedical Computing Ltd (UK) Jonkoping University Engineering School (Sweden) Universidad Nacional Autonoma de Mexico (Mexico) Ministério da Ciência e Tecnologia e Inovação (Brazil) Jaypee University of Information Technology (India) Zakir Hussain College of Engineering & Technology (India) Faculdade de Engenharia da Universidade do Porto (Portugal) Centre Interdisciplinaire de Nanoscience de Marseille (France)

  4. http://profiles.ucdenver.edu

  5. University Spotlights Harvard University UCSF University of Minnesota U. Rochester Med Center http://connects.catalyst.harvard.edu http://profiles.ucsf.edu http://profiles.ahc.umn.edu http://urmc.rochester.edu/profiles South Carolina UConn Health Center UMASS Medical School Penn State http://profiles.healthsciencessc.org http://profiles.uconn.edu http://profiles.umassmed.edu http://profiles.psu.edu Boston University Wake Forest Medicne RTRN (18 RCMI Institutions) Baylor College of Med http://profiles.tsi.wakehealth.edu http://profiles.bumc.bu.edu http://rtrnprofiles.rtrn.net/profilesweb http://profiles.viictr.org

  6. Upcoming Events • VIVO Annual Conference, St. Louis, Missouri, August 14-16, 2013 [includes a Profiles RNS Workshop] • 3rd Global TechMining Conference (Text-mining, Analysis, and Visualization), Atlanta, Georgia, September 25, 2013 • American Medical Informatics Association (AMIA) Annual Symposium, Washington, DC, November 16-20, 2013

  7. Identifying Translational Science • T1-T4 is qualitative, no consensus on precise definition. • Can a bibliometric technique quantitatively identify translation? • Weber GM. Identifying translational science within the triangle of biomedicine. J Transl Med. 2013 May 24;11:126. doi: 10.1186/1479-5876-11-126. • http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23705970 Image from http://catalyst.harvard.edu

  8. Research Levels - Francis Narin 1976 • Narin assigns other journals to a level based on which prototype journals reference it most. • Grant Lewison (2004) classifies articles based on whether their titles include one of 100 “basic” or 100 “clinical” keywords.

  9. ACH Classification – Weber 2013 • Based on MeSH terms assigned to articles • “H”: Humans B01.050.150.900.649.801.400.112.400.400 (Human), M01 (Person) • “A”: Animals B01 (Eukaryota) [except Human] • “C”: Cells and Molecules A11 (Cells), B02 (Archaea), B03 (Bacteria), B04 (Viruses), G02.111.570 (Molecular Structures), G02.149 (Chemical Processes) • If multiple terms then AC, AH, CH, ACH

  10. ACH Classification – Weber 2013

  11. Triangle of Biomedicine

  12. Triangle of Biomedicine: Disciplines

  13. Comparison to Research Levels C AC ACH A CH AH H Basic Research Clinical Medicine C Basic Research CH AC ACH A Clinical Medicine H AH

  14. Triangle of Biomedicine: Changes over Time

  15. Triangle of Biomedicine: Citation Flow

  16. Triangle of Biomedicine: Harvard Faculty

  17. Triangle of Biomedicine: Harvard Faculty

  18. Limitations • NLM takes a year or more to assign MeSH terms to articles. • Would the results be different using a commercial dataset? • “H” category very large. Should there be a “P” category for health practice? • Weber GM. Identifying translational science within the triangle of biomedicine. J Transl Med. 2013 May 24;11:126. doi: 10.1186/1479-5876-11-126. http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23705970

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