1 / 6

1st EELA Grid School

EMBOSS over a Grid. Eduardo MURRIETA LEON Romualdo ZAYAS LAGUNAS Pierre-Alain BRANGER Jérôme VERLEYEN Roberto RODRIGUEZ César BONAVIDES Alfredo HERNANDEZ. 1st EELA Grid School. December 6th of 2006. Installation. Uncompress EMBOSS-latest.tar.gz configure, make, make install

jael-mccarty
Download Presentation

1st EELA Grid School

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. EMBOSS over a Grid Eduardo MURRIETA LEON Romualdo ZAYAS LAGUNAS Pierre-Alain BRANGER Jérôme VERLEYEN Roberto RODRIGUEZ César BONAVIDES Alfredo HERNANDEZ 1st EELA Grid School December 6th of 2006

  2. Installation • Uncompress EMBOSS-latest.tar.gz • configure, make, make install • Installation of embassy (non EMBOSS tools) • Setting up DB (4.4GB/3.5hs/20%) • Tests, OK!

  3. Plan A JDL File Type = "Job"; JobType = "Normal"; Executable = “seqret"; Arguments = "-outseq“,”salida.fasta”; StdError = “stderr.err"; InputSandbox = { “seqret”, “*fasta”, “*idx”, … }; OutputSandbox = {“salida.fasta“, “stderr.err”}; UI CE WNs BDII RB

  4. Plan B JDL File Type = "Job"; JobType = "Normal"; Tag = “EMBOSS-4.0.0”; Executable = “seqret"; Arguments = "-outseq“,”salida.fasta”; StdError = “stderr.err"; OutputSandbox = {“salida.fasta“, “stderr.err”}; UI CE WNs BDII RB

  5. Plan C UI CE WNs GFAL BDII RB SE

  6. ! Muito Obrigado Respostas

More Related